DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3251 and Otud6a

DIOPT Version :9

Sequence 1:NP_608851.1 Gene:CG3251 / 33671 FlyBaseID:FBgn0031622 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_228584.1 Gene:Otud6a / 302426 RGDID:1560855 Length:290 Species:Rattus norvegicus


Alignment Length:159 Identity:29/159 - (18%)
Similarity:62/159 - (38%) Gaps:37/159 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RKARDPIDRFLERRQLFRKHMLGDASSLFRVVAEQVYDTQMLHYEVRMECVRY------------ 66
            |:..:.:...|..:.|..|.:..|...::|.:.:|      |.:.|.:|.:||            
  Rat   127 REEEEKVAAILGAKNLEMKTIPADGHCMYRAIQDQ------LVFSVTIESLRYRTAYYMRKHIDD 185

  Fly    67 ---MFTKWKTFRRFVSGDFDEYLWHLGKTKTAGTILELGAMCHLYRRNVIIYEPFDM----GRMV 124
               .||:.:....:...||..|...:....:.|..|||.|:.|      ::..|.::    ..::
  Rat   186 FLPFFTEPEAGNFYTREDFLRYCDDIVHKASWGGQLELRALSH------VLQTPIEVVQANSPII 244

  Fly   125 TYNKDY--KEILRIFMN---SMG-HFETV 147
            ...::|  |.:..::::   ..| |:.:|
  Rat   245 VIGEEYTRKPLTLVYLHYACDFGEHYNSV 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3251NP_608851.1 OTU 36..>115 CDD:303090 19/93 (20%)
Otud6aXP_228584.1 COG5539 5..272 CDD:227826 28/156 (18%)
OTU 148..270 CDD:396767 23/133 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338861
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.