DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP6 and cbx5

DIOPT Version :10

Sequence 1:NP_608842.1 Gene:HP6 / 33661 FlyBaseID:FBgn0031613 Length:106 Species:Drosophila melanogaster
Sequence 2:NP_988907.2 Gene:cbx5 / 394502 XenbaseID:XB-GENE-972727 Length:200 Species:Xenopus tropicalis


Alignment Length:73 Identity:36/73 - (49%)
Similarity:53/73 - (72%) Gaps:3/73 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GFDLGLEPLRILGACNWSGKLTFLMQWKGCDEAGLVPAEVLNVRCPQMVISFYEERI---VFTDE 80
            ||:.||||.:|:||.:..|:|.|||:||..|||.||.|:..||:|||:||:|||||:   .:.:|
 Frog   125 GFERGLEPEKIIGATDSCGELMFLMKWKDSDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEE 189

  Fly    81 GDEEDLES 88
            .:.::.|:
 Frog   190 SESKEKEA 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP6NP_608842.1 CSD 24..75 CDD:349275 30/50 (60%)
cbx5NP_988907.2 CD_HP1alpha_Cbx5 37..85 CDD:349298
CSD_HP1alpha_Cbx5 125..182 CDD:349302 34/56 (61%)
Blue background indicates that the domain is not in the aligned region.

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