DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP6 and cbx1a

DIOPT Version :10

Sequence 1:NP_608842.1 Gene:HP6 / 33661 FlyBaseID:FBgn0031613 Length:106 Species:Drosophila melanogaster
Sequence 2:NP_956040.2 Gene:cbx1a / 326746 ZFINID:ZDB-GENE-030131-4945 Length:212 Species:Danio rerio


Alignment Length:84 Identity:42/84 - (50%)
Similarity:58/84 - (69%) Gaps:6/84 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PVKQRN------GFDLGLEPLRILGACNWSGKLTFLMQWKGCDEAGLVPAEVLNVRCPQMVISFY 71
            |.|:::      ||..||:|.||:||.:.||:|.|||:||..|||.||||:..||:|||:|||||
Zfish   127 PKKRKDEQDKPRGFARGLDPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFY 191

  Fly    72 EERIVFTDEGDEEDLESDN 90
            |||:.:.....||:.:.|:
Zfish   192 EERLTWHSYPSEEEEKKDD 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP6NP_608842.1 CSD 24..75 CDD:349275 33/50 (66%)
cbx1aNP_956040.2 CD_CSD 56..98 CDD:475127
CSD_HP1beta_Cbx1 139..196 CDD:349301 37/56 (66%)
Blue background indicates that the domain is not in the aligned region.

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