DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP6 and chp1

DIOPT Version :10

Sequence 1:NP_608842.1 Gene:HP6 / 33661 FlyBaseID:FBgn0031613 Length:106 Species:Drosophila melanogaster
Sequence 2:NP_593666.1 Gene:chp1 / 2542239 PomBaseID:SPAC18G6.02C Length:960 Species:Schizosaccharomyces pombe


Alignment Length:65 Identity:15/65 - (23%)
Similarity:27/65 - (41%) Gaps:17/65 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ALPVKQRNGFDLGL------EPLRILGACNWSGKLTFLMQWKGCDEAGLVPAEVLN--VRCPQMV 67
            :||:|..|...:|.      |||         .|||:....:.....|.|.:..|:  ::.|:::
pombe   773 SLPLKSPNDSHVGTDFKKNNEPL---------DKLTYSQYLRPMFPKGGVVSVTLSALIKTPRLL 828

  Fly    68  67
            pombe   829  828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP6NP_608842.1 CSD 24..75 CDD:349275 10/52 (19%)
chp1NP_593666.1 CD_Chp1_like 21..72 CDD:349286
RRM_SF 313..373 CDD:409669
SPOC_Chp1p 518..650 CDD:439208
Blue background indicates that the domain is not in the aligned region.

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