DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ine and Slc6a1

DIOPT Version :10

Sequence 1:NP_477012.1 Gene:ine / 33659 FlyBaseID:FBgn0011603 Length:943 Species:Drosophila melanogaster
Sequence 2:NP_077347.1 Gene:Slc6a1 / 79212 RGDID:620533 Length:599 Species:Rattus norvegicus


Alignment Length:598 Identity:231/598 - (38%)
Similarity:364/598 - (60%) Gaps:30/598 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 STDGRKLVIRRVPTTANELFDMVNPQTPPPLGVDDDDSYLDMSDETAQLKPRQQHWANKMQFVLA 349
            :||..|:...::.|..:|          .|:..|...:.:....:.|...|.:..|..:..|:::
  Rat     2 ATDNSKVADGQISTEVSE----------APVASDKPKTLVVKVQKKAGDLPDRDTWKGRFDFLMS 56

  Fly   350 CIGYSVGLGNVWRFPYMCYKSGGGVFLVPYCIILFICSIPLLFMELSVGQYTGRGPIGALG--QL 412
            |:||::||||||||||:|.|:|||.||:||.:.|....:||..:|.|:||||.   ||.||  :|
  Rat    57 CVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTS---IGGLGVWKL 118

  Fly   413 CPLFKGAGLASVVVSFLMSTYYSVIIGYSIYYFFTSFKTEMPWIDCNNRWNTPDCWVPQRKGINA 477
            .|:|||.|||:.|:||.::.||.|||.::|||.:.||.|.:||..|:|.|||..|:      .|.
  Rat   119 APMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCF------SNY 177

  Fly   478 SAPDTSRTPSE--EFFENKVLQISGGLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYF 540
            |..:|:...|.  ||:|..:.|::.||:.||.:||.|...|..||::|||..||.:..:.||.||
  Rat   178 SLVNTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYF 242

  Fly   541 TATFPFVLIIILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLGITFGSMISFA 605
            :||:|::::|||..|.|||.||.||:.|:..|.:.:|.::.||::||:|.|.|.|:..||:|:..
  Rat   243 SATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALG 307

  Fly   606 SYNKYNNNILRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGDGPGMIFVVYPQAM 670
            |||.::||:.||::.|..:|..||:..|...||.:|.:|.....::.||...|||:.|:.||:|:
  Rat   308 SYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAV 372

  Fly   671 AKMPYAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCLF 735
            .::|.:.|||::||.|||.||::|||..||..:|::.|.:||.::..   .|:.:..||::|.|.
  Rat   373 TQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNR---RELFIAAVCIVSYLI 434

  Fly   736 GMPNIIQGGIYYFQLMDHYAAS-VTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPSFYLRSC 799
            |:.||.|||||.|:|.|:|:|| ::::||.|.:.::|:||||..|...|:::|.|..|..:.:.|
  Rat   435 GLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLC 499

  Fly   800 WLVLGPCLLFAIWVLSLINYHEPTYHNGRYTYPDWAYGIGWMFASFSLICIPGYAVINFLRSSGD 864
            |....|.::..:::.|.:.....|.  |.|.:|.|..|:||:.|..|::.||||....||...| 
  Rat   500 WSFFTPIIVAGVFLFSAVQMTPLTM--GSYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKG- 561

  Fly   865 TFWERIRNTLRPN 877
            :..:|::..::|:
  Rat   562 SLKQRLQVMIQPS 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ineNP_477012.1 SLC5-6-like_sbd 337..876 CDD:444915 221/543 (41%)
Slc6a1NP_077347.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 6/30 (20%)
SLC6sbd_GAT1 2..599 CDD:212075 231/598 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599
PDZ-binding 597..599
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.