DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ine and slc6a4b

DIOPT Version :9

Sequence 1:NP_001162871.1 Gene:ine / 33659 FlyBaseID:FBgn0011603 Length:943 Species:Drosophila melanogaster
Sequence 2:NP_001170930.1 Gene:slc6a4b / 664770 ZFINID:ZDB-GENE-060314-2 Length:591 Species:Danio rerio


Alignment Length:540 Identity:209/540 - (38%)
Similarity:336/540 - (62%) Gaps:10/540 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 WANKMQFVLACIGYSVGLGNVWRFPYMCYKSGGGVFLVPYCIILFICSIPLLFMELSVGQYTGRG 404
            |:.||.|:|:.||::|.|||||||||:||::|||.||:||.::.....:||.:|||::||:...|
Zfish    41 WSKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYVLMAVFGGVPLFYMELALGQFHRTG 105

  Fly   405 PIGALGQLCPLFKGAGLASVVVSFLMSTYYSVIIGYSIYYFFTSFKTEMPWIDCNNRWNTPDCWV 469
            .|.....:||:|||.|.|..:::..:|.||:.||.::::||::||.:.:||..|:|.|||.:|..
Zfish   106 AISIWKHICPIFKGIGFAICIIALYVSFYYNTIIAWALFYFYSSFSSTLPWTSCDNDWNTENCTN 170

  Fly   470 PQRKGINASAPDTSRTPSEEFFENKVLQI--SGGLEYPGMMRWELFACLICAWLMVYFATWKSIK 532
            ...|. |.:..:.||:|:|||:...||.:  |.||...|.:||:|..||...:.:|||:.||.:|
Zfish   171 YFGKD-NVTWTNYSRSPAEEFYTRNVLAVHESSGLGNVGYIRWQLMLCLFLIFTIVYFSLWKGVK 234

  Fly   533 SSAKVRYFTATFPFVLIIILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLGIT 597
            :|.||.:.|||.|:|:::|||:|..||.||.:|:.|:..|||.:||..:||::||:|.|.|||..
Zfish   235 TSGKVVWVTATLPYVVLLILMIRGATLPGAWKGVVFYLNPKWEKLKETSVWVDAAAQIFFSLGPG 299

  Fly   598 FGSMISFASYNKYNNNILRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTNVRDVIGD-GPGM 661
            ||.:::.:|||.:.||..||.:..|.||.:||.:.|...|:.||.:|.::|.||.||..| ||.:
Zfish   300 FGVLLALSSYNPFTNNCYRDAIVTSLVNCLTSFVSGFVIFTVLGYMAEQRNVNVEDVARDKGPSL 364

  Fly   662 IFVVYPQAMAKMPYAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDGFPRWIKRHLGYHEIVVL 726
            :|:.||:|:|.|..:..:|::||.|::.|||:|.|..:|.::|::.|.:|..:...   .|:.||
Zfish   365 LFITYPEAIANMVGSTFFAIIFFVMMITLGLDSTFGGLEAIITAVMDEYPDVLSHR---RELFVL 426

  Fly   727 FVCVISCLFGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKA 791
            .:.|:..|..:..:.:||.|..:|::.:....:|:.:.|.:..|::||||..|.|.::|.|.|..
Zfish   427 GLVVVCFLGSLSTLTKGGAYVVKLLEEFGVGSSIIAIVFLEATAVSWFYGINRFSNDIKSMLGYT 491

  Fly   792 PSFYLRSCWLVLGPCLLFAIWVLSLINYHEPTYHNGRYTYPDWAYGIGWMFASFSLICIPGYAVI 856
            |..:.:.||:.:.|..|..|.:.||:|....|..:  |.:|||:..:|::..:.|.|.||.|.|.
Zfish   492 PGLFWKVCWVAISPAFLAYIIISSLLNPQTLTLFD--YEFPDWSITVGYIIGASSFIWIPIYMVY 554

  Fly   857 NFLRSSGDTFWERIRNTLRP 876
            ..:.:.| :..:|:...|||
Zfish   555 KLVWTPG-SLKQRLAVCLRP 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ineNP_001162871.1 SLC5-6-like_sbd 337..876 CDD:294310 207/538 (38%)
slc6a4bNP_001170930.1 SLC6sbd_SERT 38..574 CDD:271399 209/540 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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