DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ine and snf-12

DIOPT Version :9

Sequence 1:NP_001162871.1 Gene:ine / 33659 FlyBaseID:FBgn0011603 Length:943 Species:Drosophila melanogaster
Sequence 2:NP_509527.1 Gene:snf-12 / 181143 WormBaseID:WBGene00004911 Length:1022 Species:Caenorhabditis elegans


Alignment Length:631 Identity:190/631 - (30%)
Similarity:320/631 - (50%) Gaps:69/631 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 RSLASI-GIGSTDGRKLVIRRVPTTANELFDMVNPQTPP-PLGVDDDDSY--LDMSDETAQLKPR 336
            |:::|: |:.|.|    ||:.:..:|.|      .|||. |...|....|  .|:...:.| ..|
 Worm   103 RTISSLPGVSSPD----VIQTIDVSALE------DQTPQRPHWWDQFQLYRRTDLLRFSKQ-NDR 156

  Fly   337 QQHWANKMQFVLACIGYSVGLGNVWRFPYMCYKSGGGVFLVPYCIILFICSIPLLFMELSVGQYT 401
            ::.|..:..|.|:|:|:.||:|:..|||...|:.|||||.:||...|....:||:|:.||:||||
 Worm   157 RELWRTQKDFFLSCLGFMVGVGHTMRFPAKVYQHGGGVFFIPYLFSLIFFGLPLVFLHLSLGQYT 221

  Fly   402 GRGPIGALGQLCPLFKGAGLASVVVSFLMSTYYSVIIGYSIYYFFTSFK-----TEMPWIDCNNR 461
            |:....|..:|.|:..|.|.|.||::..::.||::|:.::|:|||.|.|     .|:||..|.:.
 Worm   222 GQAANTAFQRLMPIGSGVGWALVVIAIPVAVYYNIIVAWAIHYFFQSAKGLLLGDELPWETCRDE 286

  Fly   462 W----------NTPDCWVPQRKGINASAPDTSRTPSEEFFENKVLQISGGLEYP-GMMRWELFAC 515
            |          |...|:       |::   .|.|..|.||.::||.:|...::. |.::..|...
 Worm   287 WQLDNRCCNLHNLHSCF-------NST---NSITAPEAFFHSEVLSLSTFGDFALGPLQSHLVLS 341

  Fly   516 LICAWLMVYFATWKSIKSSAKVRYFTATFPFVLIIILMVRAVTLDGAAEGLRFFFRPKWSELKNA 580
            |..|||:|:|..:|.:.|.|:....|||.|::|:.||::|.::|.||.:||.|.|....::|...
 Worm   342 LAAAWLLVFFGVFKGLGSIAQTMNVTATVPYLLLSILLLRGISLPGANKGLTFLFTVDSTKLWKW 406

  Fly   581 NVWINAASQNFNSLGITFGSMISFASYNKYNNNILRDTVAVSAVNMITSLLVGIFAFSTLGNLAL 645
            .:|.:||.|.|..|||..|.:||.|::::|.|||.||:|.:..::.:||.|.|:..||.:|.:|.
 Worm   407 QIWKSAAEQVFYELGIDAGPLISMAAFSRYRNNIYRDSVLLVIMDALTSCLSGMVIFSFVGFIAS 471

  Fly   646 EQNTNVRDVIGDGP-GMIFVVYPQAMAKMPYAQLWAVMFFFMLLCLGLNSQFAIVEVVVTSIQDG 709
            |.|:||.||:...| .:.|.|||...:.|.:..|||.:||.||:...::::||.:|::.::..:.
 Worm   472 ESNSNVNDVLKHDPLYLSFTVYPGVTSFMYWGGLWATLFFGMLVLAAIDAEFAWLEMIASAFMNH 536

  Fly   710 FPRWIKRHLGYHEIVVLFVCVISCLFGMPNIIQGGIYYFQLMDHYAASVTIMFLAFCQMIAIAWF 774
            |.   .::......::.|:|:.....|:|...||||:.|..:::..|:.....||...:..:.:.
 Worm   537 FS---MKNKAVENRLLAFLCLAGFFLGLPLCAQGGIFVFHAIENLNANWNSFSLALLSVAIVCYV 598

  Fly   775 YGTGRLSKNVKQM-------TGKAP-------------SFYLRSCWLVLGPCLLFAIWVLSLINY 819
            ||......::..|       ..||.             ..|::.....:.|.:|..:.|.|::.|
 Worm   599 YGIDNYLTDISAMLRVPRIQISKATRLKEKLIYFFGPGGIYIKFSLCFICPVILTVLLVASVLGY 663

  Fly   820 HEPTYHNGRYTYPDWAYGIGWMFASFSLICIP--GYAVINFLRSSG 863
            ...:: .||....|:.. :.|:.....|:.:|  .:..|..:|:.|
 Worm   664 QRISF-AGRPIPIDYEI-VAWIVMIGPLLVVPLVAFMQIRQIRNEG 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ineNP_001162871.1 SLC5-6-like_sbd 337..876 CDD:294310 172/566 (30%)
snf-12NP_509527.1 SLC6sbd 158..660 CDD:271359 161/514 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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