DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FIG4 and synj1

DIOPT Version :9

Sequence 1:NP_608841.1 Gene:FIG4 / 33658 FlyBaseID:FBgn0031611 Length:858 Species:Drosophila melanogaster
Sequence 2:XP_005155414.1 Gene:synj1 / 337236 ZFINID:ZDB-GENE-030131-9180 Length:1612 Species:Danio rerio


Alignment Length:626 Identity:167/626 - (26%)
Similarity:262/626 - (41%) Gaps:156/626 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VASLSGSPKVT---------SAYGVLGFVRFLEG----YYLLLVTKRKCCAHIGRHLVYTIKDTV 123
            ||.||.:.|.|         .|||:||.:|...|    :.|::||.   |:.:|:     ::|:.
Zfish    38 VAVLSAAEKETIKASYTKMLDAYGILGVLRLNLGDSMLHSLVVVTG---CSSVGK-----VQDSE 94

  Fly   124 MVRV--NEVTSQRPPHPHEDRYKRMFQNIDLR-----SNFYFSYSYDLTRTLQYNESAPRYVGAK 181
            :.||  .:..|.:.....|||.      .|:|     .||||::|               ..|..
Zfish    95 VFRVTGTDFVSLKNDPTDEDRI------ADVRKVLNSGNFYFAWS---------------STGVS 138

  Fly   182 VDLDRDEPLPDWNTLTSNVDKAHERVDYAFRSD-SRKRFVWNAYLLQPME--GIMLKDWLLEVTH 243
            :||..:               ||.|:    |.| |..||.||..|...::  |:...||||.:..
Zfish   139 LDLSLN---------------AHRRI----REDTSDNRFFWNQSLHLHLKHYGVNCDDWLLRLMC 184

  Fly   244 GFVSQSCISIFGRHVNVCLVARRSSRFAGTRFLKRGANFQGDVANEVETEQIVSDGQRICAFTQM 308
            |.|....|....:....|:::|.||..|||||..||.|..|.|||.||||||:....::.:|.|:
Zfish   185 GGVEIRTIYAGHKQAKACVISRLSSERAGTRFNVRGTNDDGQVANFVETEQIIFLDDKVSSFIQI 249

  Fly   309 RGSIPSHWSQDISKMVPKPQIQ-----LDICDPY-AQTPSL--HFERLLFHYGAPLIMLNLVKKR 365
            |||||..|.|        |.||     :.:...: |..|:.  ||..|...||..|| :||:..:
Zfish   250 RGSIPLFWEQ--------PGIQVGSHRVKLSRGFEANAPAFERHFSALKRLYGKQLI-INLLGMK 305

  Fly   366 ERRKHESIISKELEYSIRYLNQFLPPPHRMKHIHFDMARQSRLSGGNVMEQLAIHAESIVQMTG- 429
            |   .|.::||..:..::....    .:.:|.::||.  ...:.||...:...:....|.:... 
Zfish   306 E---GEHMLSKAFQSHLKASEH----SNAVKMLNFDY--HQMVKGGKTEKLQTVLKPQISKFVED 361

  Fly   430 -MFFKAAGSEPGL---QTGIVRTNCVDCLDRTNSAQFAIGKCALGHQLERLGFVKSAKL--EFDS 488
             .||..:| |.|:   |:|.:|:||:||||||||.|..|....|..|||.:|..:..:|  .|..
Zfish   362 CDFFYYSG-ETGIQRCQSGTIRSNCLDCLDRTNSVQAFIALEMLPKQLEAMGLTEKPQLVARFQE 425

  Fly   489 DCVTMLENLYEEHGDTLALQYGGS-QLVHRIKTYRKTAPWGSQGSDVMQTLSRYYSNTFSDTEKQ 552
                :..:::..:||:::..|.|: .|..:.|        |.:..|..::::|...|.|.|:.||
Zfish   426 ----VFRSMWSTNGDSISKIYAGTGALDGKAK--------GGKLKDGARSVTRTIQNNFFDSSKQ 478

  Fly   553 HSINLF----------------------LGIYKPSLTKQGPPIWELQTDYDMHNAFV-PRADSKA 594
            .:|::.                      |.:.:|.|....|.:  |......|..:. |:     
Zfish   479 EAIDILRLGSTLNSDLADKARALLTTSSLYVSEPILQSASPRV--LLGMCQNHFKYTRPK----- 536

  Fly   595 ITDWVRHKVRACLPYSCADSNKLVKEL-FRVHSSGLEMIDA 634
                   |:|.|:.....:..|..:.: ||.|:....::||
Zfish   537 -------KIRVCVGTWNVNGGKQFRSIAFRNHTLNDWLLDA 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FIG4NP_608841.1 COG5329 19..599 CDD:227637 158/588 (27%)
Syja_N 85..407 CDD:280532 99/343 (29%)
synj1XP_005155414.1 Syja_N 60..340 CDD:280532 99/345 (29%)
INPP5c_Synj1 538..873 CDD:197332 8/33 (24%)
RRM_SF 872..1010 CDD:302621
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359616at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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