DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FIG4 and Sacm1l

DIOPT Version :9

Sequence 1:NP_608841.1 Gene:FIG4 / 33658 FlyBaseID:FBgn0031611 Length:858 Species:Drosophila melanogaster
Sequence 2:NP_001344426.1 Gene:Sacm1l / 116482 RGDID:69223 Length:609 Species:Rattus norvegicus


Alignment Length:585 Identity:164/585 - (28%)
Similarity:259/585 - (44%) Gaps:108/585 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 RFRLLTIDRLAHNRLSIEENANEFNSLEIRRFVASLSGSPKVTSAYGVLGFVRFLEGYYLLLVTK 104
            :|.:...|..|.:.|.|:..:.|. :|.:::.|..   |......||::|.:..:.|.||:::||
  Rat    17 KFYVEACDDGADDVLIIDRVSTEV-TLAVKKDVPP---SAVTRPIYGIMGTIHLVAGNYLVVITK 77

  Fly   105 RKCCAHIGRHLVYTIKD-------TVMVRVNEVTSQRPPHPHEDRYKRMFQNIDLRSNFYFSYSY 162
            :........|:::...|       ..|:.:.::..|     ....:..|..::.....||||.:|
  Rat    78 KMKVGEFFNHVIWKATDFDVLSYKKTMLHLTDIQLQ-----DNKTFLAMLNHVLSTDGFYFSTTY 137

  Fly   163 DLTRTLQYNESAPRYVGAKVDLDRDEPLPDWNTLTSNVDKAHERVDYAFRSDSRKRFVWNAYLLQ 227
            |||.|||                          ..||.....:.:....|:|  :|||||.:||:
  Rat   138 DLTHTLQ--------------------------RLSNTSPEFQEMSLLERAD--QRFVWNGHLLR 174

  Fly   228 PMEG-IMLKDWLLEVTHGFVSQSCISIFGRHVNVCLVARRSSRFAGTRFLKRGANFQGDVANEVE 291
            .:.. ..:..:.|.|.|||::....||.|::.:..|::|||...||.|:..||.:.:|..||.||
  Rat   175 ELSAQPEVHRFALPVLHGFITMHSCSINGKYFDWILISRRSCFRAGVRYYVRGIDSEGHAANFVE 239

  Fly   292 TEQIVSDGQRICAFTQMRGSIPSHWSQDIS-KMVPKPQIQ--LDICDPYAQTPSLHFERLLFHYG 353
            |||||.......:|.|.|||||..|||..: |..|.|||.  .:..|.:.:    ||:..:..||
  Rat   240 TEQIVHYSGNRASFVQTRGSIPVFWSQRPNLKYKPDPQINKVANHMDGFQR----HFDSQVIIYG 300

  Fly   354 APLIMLNLVKKRERRK-----HESIISKELEYSIRYLNQFLPPPHRMKHIHFDMARQSRLSGGNV 413
            ..:| :|||..:...|     ...::|......|||             |.||..::.:    |:
  Rat   301 KQVI-INLVNHKGSEKPLEQTFAKMVSSLGSGMIRY-------------IAFDFHKECK----NM 347

  Fly   414 -MEQLAIHAESIVQM----TGMFFKAAGSEPGLQTGIVRTNCVDCLDRTNSAQFAIGKCALGHQL 473
             .::|:|..:.:.:|    :.....:||.....|.|:.|:||:|||||||..|..:.:.:|..||
  Rat   348 RWDRLSILLDQVAEMQDELSYFLVDSAGKVVTNQEGVFRSNCMDCLDRTNVIQSLLARRSLQAQL 412

  Fly   474 ERLGFVK-SAKLEFDSDCVTMLENLYEEHGDTLALQYGGSQLVHRIKT-YRKTAPWGSQG--SDV 534
            :|||.:. ..|||...:...:.:|.:.::.:..|.||.|:   ..:|| :.:|......|  .|.
  Rat   413 QRLGVLHVGQKLEEQDEFEKIYKNAWADNANACAKQYAGT---GALKTDFTRTGKRTQLGLVMDG 474

  Fly   535 MQTLSRYYSNTFSDTEKQHSINLFLGIYKPSLTKQGPPIWELQTDYDMHNAF-VPRADSKAITDW 598
            ..:|.|||.|.|||..:|.||:||||.|...             :.|.|:.. |||       ||
  Rat   475 FNSLLRYYKNNFSDGFRQDSIDLFLGNYSVD-------------ELDSHSPLSVPR-------DW 519

  Fly   599  598
              Rat   520  519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FIG4NP_608841.1 COG5329 19..599 CDD:227637 164/585 (28%)
Syja_N 85..407 CDD:280532 94/337 (28%)
Sacm1lNP_001344426.1 COG5329 57..513 CDD:227637 150/526 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5329
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D359616at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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