DRSC/TRiP Functional Genomics Resources

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Protein Alignment FIG4 and synj1

DIOPT Version :10

Sequence 1:NP_608841.1 Gene:FIG4 / 33658 FlyBaseID:FBgn0031611 Length:858 Species:Drosophila melanogaster
Sequence 2:XP_004912203.1 Gene:synj1 / 100487517 XenbaseID:XB-GENE-956330 Length:1548 Species:Xenopus tropicalis


Alignment Length:509 Identity:144/509 - (28%)
Similarity:223/509 - (43%) Gaps:108/509 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 KVTSAYGVLGFVRFLEG----YYLLLVTKRKCCAHIGRHLVYTIKDTVMVRV--NEVTSQRPPHP 138
            ||..|||:||.:|...|    |||:|||.   |..:|:     |:|:.:.||  .:..|.|....
 Frog    55 KVMDAYGLLGVLRLNLGDSMSYYLVLVTG---CMSVGK-----IQDSEVFRVTSTDFISLRMDPM 111

  Fly   139 HEDRYKRMFQNIDLRSNFYFSYSYDLTRTLQYNESAPRYVGAKVDLDRDEPLPDWNTLTSNVDKA 203
            .|||...:.:.:: ..:|||::|               ..|..:||..:               |
 Frog   112 AEDRMSEVRKVLN-SGSFYFAWS---------------STGVSLDLSLN---------------A 145

  Fly   204 HERVDYAFRSDSRKRFVWNAYLLQPME--GIMLKDWLLEVTHGFVSQSCISIFGRHVNVCLVARR 266
            | |.....|:|:  ||.||..|...::  |:...:|||.:..|.|....|....:....|:::|.
 Frog   146 H-RSTQEHRTDN--RFFWNQSLHLHLKHYGVNCDEWLLRLMCGGVEIRTIYAGHQQAKACIISRL 207

  Fly   267 SSRFAGTRFLKRGANFQGDVANEVETEQIVSDGQRICAFTQMRGSIPSHWSQDISKMVPKPQIQL 331
            |...|||||..||.|..|..||.|||||::.....:.:|.|:|||||..|.|        |.:|:
 Frog   208 SCERAGTRFNVRGTNDYGQAANFVETEQVIYLDDCVSSFIQIRGSIPLFWEQ--------PGLQV 264

  Fly   332 DI--------CDPYAQTPSLHFERLLFHYGAPLIMLNLVKKRERRKHESIISKELEYSIRYLNQF 388
            ..        .:..|.....||..|...||...| :||:..:|   .||::|:..:      |..
 Frog   265 GSHRVRMSRGFEANAPAFDRHFLTLKRLYGKQFI-VNLLGSKE---GESMLSRAFQ------NHL 319

  Fly   389 LPPPH--RMKHIHFDMARQSRLSGGNVMEQLAIHA------ESIVQMTGMFFKAAGSEPGLQTGI 445
            ....|  .::.::||..:..|  ||...:   :|:      .:.::..|.||.........|.|.
 Frog   320 KASEHSASIQMMNFDYHQMVR--GGKAEK---LHSVLKPKVNTFLEECGFFFLDKNGVHRTQIGT 379

  Fly   446 VRTNCVDCLDRTNSAQFAIGKCALGHQLERLGFVKSAKLEFDSDCVT----MLENLYEEHGDTLA 506
            :|:||:||||||||.|..:|...|..|||.||..:..:|      ||    :..:::..:||:::
 Frog   380 IRSNCLDCLDRTNSVQAFLGLEMLLKQLEVLGLAEKPQL------VTRFQEVFRSMWSTNGDSIS 438

  Fly   507 LQYGGS-QLVHRIKTYRKTAPWGSQGSDVMQTLSRYYSNTFSDTEKQHSINLFL 559
            ..|.|: .|..:.|        |.:..|..::::|...|.|.|..||.:|::.|
 Frog   439 KIYAGTGALEGKAK--------GGKLKDGARSVTRTIQNNFFDGSKQEAIDVLL 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FIG4NP_608841.1 Syja_N 85..407 CDD:460545 94/339 (28%)
synj1XP_004912203.1 COG5329 9..484 CDD:227637 143/507 (28%)
EEP 537..872 CDD:469791
RRM_SF 871..987 CDD:473069
PHA03247 <1061..1264 CDD:223021
Atrophin-1 1164..>1426 CDD:460830
Blue background indicates that the domain is not in the aligned region.

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