DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15436 and topi

DIOPT Version :9

Sequence 1:NP_608840.1 Gene:CG15436 / 33657 FlyBaseID:FBgn0031610 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster


Alignment Length:329 Identity:78/329 - (23%)
Similarity:118/329 - (35%) Gaps:81/329 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 EISEDEDARIDS--ASAADDDGKSDSKKVAF---------ECRECHKKYQRKGTFLRHMRTHMDG 151
            |:..|.:..||:  |.|..:...:..||..|         :|..|...:......|.|..:|:..
  Fly   321 ELLLDGEMLIDNDPAFATSNQNTNPPKKEMFSSLILGSVLQCEFCEYIFADIAELLVHSASHVAE 385

  Fly   152 QSFPCPYCKRNFRLRVTLKAHMKTH-------------NAAKPYECSHCAKTFAQQSTLQSH--- 200
            :.|.|..|............|.:|.             ..::.:.|:.|...||....||.|   
  Fly   386 RRFECTACDIQMNTAKEASIHFQTDCIFMREAIRSLNVTLSRYFVCNVCELKFANTDLLQEHRCT 450

  Fly   201 ------------------------------------------------ERTHTGE---RPFKCSQ 214
                                                            |..:||.   |.:.|..
  Fly   451 SFHYFPRLNENGKKLLLPCDFCDVNFEFAHDFLAHSEEKHLNKKKREKETRNTGAGRIRQYLCDI 515

  Fly   215 CSKTFIKSSDLRRHIRTHGSERPFKCSK--CTKTFTRKFHLDNHFRS-HTGERPFKCSHCPKAFA 276
            |.|::.:||.|.:|:|.|...:||.|.:  |.:.||.:..|::|.|. ||||||:.|..|.|.|.
  Fly   516 CGKSYTQSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCHTGERPYLCLVCGKRFL 580

  Fly   277 MKQHLKQHSRLHLPDRPFRCSHCPKTFRLSSTLKEHKLVHNAERTFKCPHCASFYKQRKTLARHI 341
            ......||..:|..:|.:.|..|.|.|..:..||.|:.:|..|:.:.|..|...::||....:||
  Fly   581 TGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHI 645

  Fly   342 LEIH 345
            ...|
  Fly   646 RARH 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15436NP_608840.1 zf-AD 4..78 CDD:285071
C2H2 Zn finger 128..148 CDD:275368 4/19 (21%)
C2H2 Zn finger 156..176 CDD:275368 3/19 (16%)
COG5048 <180..341 CDD:227381 56/217 (26%)
C2H2 Zn finger 184..204 CDD:275368 8/70 (11%)
zf-H2C2_2 197..219 CDD:290200 10/75 (13%)
C2H2 Zn finger 212..232 CDD:275368 8/19 (42%)
zf-H2C2_2 224..249 CDD:290200 9/26 (35%)
C2H2 Zn finger 240..260 CDD:275368 7/22 (32%)
zf-H2C2_2 252..276 CDD:290200 12/24 (50%)
C2H2 Zn finger 268..288 CDD:275368 6/19 (32%)
C2H2 Zn finger 296..316 CDD:275368 7/19 (37%)
C2H2 Zn finger 324..341 CDD:275368 4/16 (25%)
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275368
C2H2 Zn finger 277..297 CDD:275368
C2H2 Zn finger 431..453 CDD:275368 7/21 (33%)
COG5048 <450..647 CDD:227381 51/196 (26%)
C2H2 Zn finger 469..490 CDD:275368 0/20 (0%)
zf-C2H2 511..533 CDD:278523 8/21 (38%)
C2H2 Zn finger 513..564 CDD:275368 18/50 (36%)
C2H2 Zn finger 541..561 CDD:275368 6/19 (32%)
zf-H2C2_2 555..581 CDD:290200 13/25 (52%)
C2H2 Zn finger 572..592 CDD:275368 6/19 (32%)
zf-H2C2_2 585..609 CDD:290200 8/23 (35%)
zf-C2H2 598..620 CDD:278523 7/21 (33%)
C2H2 Zn finger 600..620 CDD:275368 7/19 (37%)
zf-H2C2_2 612..637 CDD:290200 7/24 (29%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446576
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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