DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15436 and snai-1

DIOPT Version :9

Sequence 1:NP_608840.1 Gene:CG15436 / 33657 FlyBaseID:FBgn0031610 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_499902.2 Gene:snai-1 / 186874 WormBaseID:WBGene00019299 Length:193 Species:Caenorhabditis elegans


Alignment Length:171 Identity:60/171 - (35%)
Similarity:91/171 - (53%) Gaps:22/171 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 EGIEDALCALLEEEDWEISEDEDARIDSASAADDDGKSDSKKVAFECRECHKKYQRKGTFLRHMR 146
            |.|||.:             ..|....|:|::......|::|:.  |:.|.|.|.......||::
 Worm    12 ETIEDLI-------------SPDPAPSSSSSSASCSSLDNQKLV--CQFCKKTYLTYFGLRRHLQ 61

  Fly   147 THMDG---QSFPCPYCKRNFRLRVTLKAHMKTHNAAKPYECSHCAKTFAQQSTLQSHERTHTGER 208
            .|.:|   ||  ||:||:.:|....||.|:|||:.  |..|:.|.|:|::...|:.|.||||||:
 Worm    62 FHKEGKLQQS--CPHCKKVYRSPGALKMHLKTHSL--PCVCNDCGKSFSRPWLLKGHLRTHTGEK 122

  Fly   209 PFKCSQCSKTFIKSSDLRRHIRTHGSERPFKCSKCTKTFTR 249
            ||.|..|.:.|...|:||.|::||..|:..:||:|.::|.|
 Worm   123 PFGCEFCGRCFADRSNLRAHLQTHSGEKKHRCSRCGQSFAR 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15436NP_608840.1 zf-AD 4..78 CDD:285071
C2H2 Zn finger 128..148 CDD:275368 6/19 (32%)
C2H2 Zn finger 156..176 CDD:275368 9/19 (47%)
COG5048 <180..341 CDD:227381 30/70 (43%)
C2H2 Zn finger 184..204 CDD:275368 7/19 (37%)
zf-H2C2_2 197..219 CDD:290200 12/21 (57%)
C2H2 Zn finger 212..232 CDD:275368 7/19 (37%)
zf-H2C2_2 224..249 CDD:290200 10/24 (42%)
C2H2 Zn finger 240..260 CDD:275368 5/10 (50%)
zf-H2C2_2 252..276 CDD:290200
C2H2 Zn finger 268..288 CDD:275368
C2H2 Zn finger 296..316 CDD:275368
C2H2 Zn finger 324..341 CDD:275368
snai-1NP_499902.2 C2H2 Zn finger 72..92 CDD:275368 9/19 (47%)
COG5048 98..>155 CDD:227381 24/56 (43%)
C2H2 Zn finger 98..118 CDD:275368 7/19 (37%)
C2H2 Zn finger 126..146 CDD:275368 7/19 (37%)
zf-H2C2_2 138..163 CDD:290200 10/24 (42%)
C2H2 Zn finger 154..170 CDD:275368 5/10 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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