DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15443 and Tmco6

DIOPT Version :10

Sequence 1:NP_608839.1 Gene:CG15443 / 33656 FlyBaseID:FBgn0031609 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_082312.3 Gene:Tmco6 / 71983 MGIID:1919233 Length:494 Species:Mus musculus


Alignment Length:377 Identity:88/377 - (23%)
Similarity:133/377 - (35%) Gaps:90/377 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 RNKIRAYAKDHRVECRIKAKDSLR---------------IGLGQVKQEVAALEMGTKDVIGMASR 68
            |.:..|..:..|.|.::.:|..||               :|..:|:|.:...:.||.:       
Mouse    23 RREREAALRKARREQQLVSKRLLREDAPEEVGGQSAAVLLGEAEVQQFLRLAQRGTDE------- 80

  Fly    69 IKRRKHATSEDLCRLSLGFLQSNDNINAFAAIPGAIQVLVKELTGPHIQRQTDAVECLCNLSLGE 133
             |.|:.|    |..|..| ||..|....|..:.|:::.||..||......|.:|..||..||..|
Mouse    81 -KEREKA----LVSLRRG-LQHPDTQQTFIRLEGSMRTLVGILTSNRALLQLEAARCLHELSHSE 139

  Fly   134 AHVSEKIVTLAGSYMVTYLDGKAERLKRSCLWTLANVLGTCDKAGSVLLQMQIVPKLWRLYIEPN 198
            .....:....|.||::|||.|.:......||:||.|::...:.....||...|||........|:
Mouse   140 QSAVAEACLPATSYLLTYLSGHSSDFIELCLYTLGNLIVESEAVRKQLLPQGIVPAFAACIQSPH 204

  Fly   199 GCQEDA---AICLSLVATRCPQHVSDEDRRYIGQNLPE----------KLHGQPASEYFMYIVHQ 250
            ....:|   |:...|.|...|:.:...   .:..:||:          ||:...|.| |.:.:|.
Mouse   205 VAVLEALGYALSQLLQAKEAPEKIIPS---ILDSSLPQQMLWLMQPGPKLNLGVAME-FAWCLHY 265

  Fly   251 ------------------------LEIVTQEHKLDAQQAECLVRFFEATLASPADRLCLI----- 286
                                    |::.....::|....|        .||.|..| ||.     
Mouse   266 IICSQVNNAVLLTHGALPTLALLLLDLAGTVQRMDDVGLE--------LLACPVLR-CLSNLLTE 321

  Fly   287 YAVRVMTNLVALGDTSLIFALADPQNLVQTLNQLFALRDPDLNLDAMRLLKN 338
            ....||...:.|.|..|:.||.       ...|.|..:.|.|..:.:.||.|
Mouse   322 VPAEVMGQQMELRDERLVAALF-------IFLQFFLQKQPALLPEGLWLLNN 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15443NP_608839.1 armadillo repeat 104..129 CDD:293788 8/24 (33%)
armadillo repeat 137..172 CDD:293788 12/34 (35%)
armadillo repeat 178..209 CDD:293788 8/33 (24%)
Tmco6NP_082312.3 SRP1 23..>391 CDD:227396 88/377 (23%)
armadillo repeat 104..135 CDD:293788 9/30 (30%)
armadillo repeat 143..178 CDD:293788 12/34 (35%)
armadillo repeat 184..218 CDD:293788 8/33 (24%)

Return to query results.
Submit another query.