DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL27A and RPL28

DIOPT Version :9

Sequence 1:NP_001188689.2 Gene:RpL27A / 33654 FlyBaseID:FBgn0285948 Length:149 Species:Drosophila melanogaster
Sequence 2:NP_011412.1 Gene:RPL28 / 852775 SGDID:S000003071 Length:149 Species:Saccharomyces cerevisiae


Alignment Length:143 Identity:91/143 - (63%)
Similarity:109/143 - (76%) Gaps:1/143 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRP 72
            ||||.|||||.|.||||||||||||||.|||.||||||.||||||||||||||.||.::.|.::|
Yeast     7 KTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKP 71

  Fly    73 EINLDKLWSLVGAEKFAELEKEKSTK-APVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAED 136
            .:||||||:|:..:|..:..|..|.: |||||.:..||.|:||:|.:|..||||||::.||.||:
Yeast    72 VLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEE 136

  Fly   137 KIKKAGGVCLLSA 149
            ||:.||||..|.|
Yeast   137 KIRAAGGVVELIA 149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL27ANP_001188689.2 PTZ00160 7..149 CDD:185489 90/141 (64%)
RPL28NP_011412.1 PTZ00160 1..149 CDD:185489 90/141 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343692
Domainoid 1 1.000 150 1.000 Domainoid score I942
eggNOG 1 0.900 - - E1_COG0200
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H115477
Inparanoid 1 1.050 186 1.000 Inparanoid score I931
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53607
OrthoFinder 1 1.000 - - FOG0001387
OrthoInspector 1 1.000 - - oto100115
orthoMCL 1 0.900 - - OOG6_100748
Panther 1 1.100 - - LDO PTHR11721
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1123
SonicParanoid 1 1.000 - - X1116
TreeFam 1 0.960 - -
1514.790

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