DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL27A and AT5G64670

DIOPT Version :9

Sequence 1:NP_001188689.2 Gene:RpL27A / 33654 FlyBaseID:FBgn0285948 Length:149 Species:Drosophila melanogaster
Sequence 2:NP_201272.1 Gene:AT5G64670 / 836588 AraportID:AT5G64670 Length:281 Species:Arabidopsis thaliana


Alignment Length:164 Identity:45/164 - (27%)
Similarity:66/164 - (40%) Gaps:48/164 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NIKRK-KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFG-------KVGM 59
            |:.|| ||||.||        ||..:....|||:.|......:.|     |:.|       ::..
plant    72 NVPRKLKTRKGRG--------IGSGKGKTAGRGHKGQKARGTMKF-----GFEGGQTPLRRRLPK 123

  Fly    60 RNFHLRRQHKFRPEINLDKLWSLVGAEKF--AELEKEKSTKAPVIDLVKFGY-----YKLLGRG- 116
            |.|..:.:..|:| :.|.|:..|:.|.|.  .||...|:.|    |:...|.     .:|:||| 
plant   124 RGFKNKFKLHFQP-VGLGKIAKLINAGKIDSHELITMKTLK----DVGAIGKQIEDGVRLMGRGA 183

  Fly   117 -------HLPARPVIVKAKYFSKKAEDKIKKAGG 143
                   |.....|.|:||       :.::.|||
plant   184 DDIKWPLHFEVSRVTVRAK-------EVVEAAGG 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL27ANP_001188689.2 PTZ00160 7..149 CDD:185489 43/160 (27%)
AT5G64670NP_201272.1 rplO 66..212 CDD:235523 45/164 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.