DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL27A and RGD1564062

DIOPT Version :9

Sequence 1:NP_001188689.2 Gene:RpL27A / 33654 FlyBaseID:FBgn0285948 Length:149 Species:Drosophila melanogaster
Sequence 2:XP_008770013.1 Gene:RGD1564062 / 307049 RGDID:1564062 Length:134 Species:Rattus norvegicus


Alignment Length:132 Identity:83/132 - (62%)
Similarity:102/132 - (77%) Gaps:0/132 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 HGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSL 82
            |||.|:||.||||||.|||||:|||||||||||||||.|||||::||:|...|.|.:||||||:|
  Rat     3 HGHSRVGKCRKHPGGCGNAGGLHHHRINFDKYHPGYFRKVGMRHYHLKRNQSFCPTVNLDKLWTL 67

  Fly    83 VGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLL 147
            |..:......|.|:..||.||:|..||||:||:|..|.:|||:|||:||::||:|||..||.|:|
  Rat    68 VSEQTRVNAAKNKTGAAPTIDVVLSGYYKVLGKGKFPKQPVIMKAKFFSRRAEEKIKGVGGACVL 132

  Fly   148 SA 149
            .|
  Rat   133 VA 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL27ANP_001188689.2 PTZ00160 7..149 CDD:185489 82/130 (63%)
RGD1564062XP_008770013.1 Ribosomal_L18e 3..134 CDD:299869 82/130 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1445443at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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