DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and NAM8

DIOPT Version :10

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:224 Identity:72/224 - (32%)
Similarity:111/224 - (49%) Gaps:41/224 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPA----------GYCFVNFISDDHA 61
            ||:||.|:....:|.:...:..:||....||:|.|......:          |||||:|.|..||
Yeast    55 QLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHA 119

  Fly    62 LDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNE-------REFSVWVGDLSSDVDDYQLYKV 119
            .:|:.| ||..||.. |..:.:||.|::||....|.       ...|::||||:.:|.:.||:::
Yeast   120 ANALLK-NGMLIPNF-PNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFEL 182

  Fly   120 FSSKFTSIKTAKVILDSL-GFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKS 183
            |.:::.|...||::.|.: |.|||||||:|...|||:.||.:|.| :.|..:.||:         
Yeast   183 FINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQG-VFLNGRAIKV--------- 237

  Fly   184 ELGGAVGEGNTNYGYGSGMTAAGGTDYSQ 212
                    |.|:   |.....:|..||::
Yeast   238 --------GPTS---GQQQHVSGNNDYNR 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:410022 31/92 (34%)
RRM2_SECp43_like 99..178 CDD:409781 32/79 (41%)
Trnau1ap 210..330 CDD:465438 1/3 (33%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023 30/90 (33%)
RRM2_SECp43_like 162..241 CDD:409781 33/96 (34%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782
Blue background indicates that the domain is not in the aligned region.

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