DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and NGR1

DIOPT Version :10

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_009771.3 Gene:NGR1 / 852513 SGDID:S000000416 Length:672 Species:Saccharomyces cerevisiae


Alignment Length:164 Identity:62/164 - (37%)
Similarity:90/164 - (54%) Gaps:25/164 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKPIPG---------TNPIVR--FRLN 85
            ||:|.:|       ..||||||.|.:...|..|: .||..|:|.         |||..:  ||||
Yeast   119 DPSTTQL-------HHAGYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLN 175

  Fly    86 SASNS---YKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSL-GFSKGYGFV 146
            .||.:   ..:|... |||::|||||....:..|..:|.::|.|:||.:|:.|.| |.|:.:|||
Yeast   176 WASGATLQSSIPSTP-EFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFV 239

  Fly   147 RFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK 180
            |||.|||::.||.:|:|....| :.:::..|.|:
Yeast   240 RFGDEDERRRALIEMSGKWFQG-RALRVAYATPR 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:410022 26/68 (38%)
RRM2_SECp43_like 99..178 CDD:409781 33/79 (42%)
Trnau1ap 210..330 CDD:465438
NGR1NP_009771.3 RRM1_NGR1_NAM8_like 35..180 CDD:410023 26/68 (38%)
RRM2_NGR1_NAM8_like 191..270 CDD:410025 33/79 (42%)
RRM3_NGR1_NAM8_like 359..430 CDD:409782
Blue background indicates that the domain is not in the aligned region.

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