Protein Alignment Secp43 and UBP1A

DIOPT Version :10

• Sequence 1: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_849806.1
• Gene: UBP1A / 841846
• AraportID: AT1G54080
• Length: 430
• Species: Arabidopsis thaliana
• Alignment Length: 310
• Identity: 71/310 - (22%)
• Similarity: 115/310 - (37%)
• Gaps: 90/310 - (29%)

  Fly     3 SVHCQLWMGSLESYMTENFI---IAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDA 64
            |.|..:::|.|...:|:..:   .:||..........|:|.::.||...|:.||:|.:...|..|
plant   145 SSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209

  Fly    65 MHKLNGKPIPGT----------------------NPIVRFRLNSASNSYKL-----PGNEREF-S 101
            ::::|||.:...                      ..:|.....|:.:..:|     |.|..:| :
plant   210 INEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTT 274

  Fly   102 VWVGDLSSDVDDYQLYKVFSSKFTS-IKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYI 165
            |:||:||.:|....|:::|.:.... |:..:|..|     ||:||||:...||...|:...|...
plant   275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGNAQP 334

  Fly   166 GL---------GTKPI---KICNAVPKP----------------KSELGGAVGEGNTNYGY---G 199
            .|         |.||.   ...|.:|.|                :.:|..|.......:..   |
plant   335 FLFSRQIRCSWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLALAKMHPQAQHSLRQAG 399

  Fly   200 SGMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAM 249
            .|:..||||        .:.|..|||              :.||.:||.|
plant   400 LGVNVAGGT--------AAMYDGGYQ--------------NVAAAHQQLM 427

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022	20/107 (19%)
		RRM2_SECp43_like	99..178	CDD:409781	27/92 (29%)
		Trnau1ap	210..330	CDD:465438	9/40 (23%)
UBP1A	NP_849806.1	RRM1_PUB1	65..135	CDD:410026
		RRM2_PUB1	147..230	CDD:410031	19/82 (23%)
		RRM_SF	273..349	CDD:473069	23/80 (29%)