DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and GRP4

DIOPT Version :10

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_189025.1 Gene:GRP4 / 821966 AraportID:AT3G23830 Length:136 Species:Arabidopsis thaliana


Alignment Length:150 Identity:50/150 - (33%)
Similarity:74/150 - (49%) Gaps:27/150 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 HKLNGKPIPGTNPIVRFRLNSASNS--YKLPGNEREFS--VWVGDLSSDVDDYQLYKVFSSKFTS 126
            :||:|        |:|..::.:||.  ..:.|:.|..|  ::||.||...||..|.:.|:| |..
plant     5 NKLSG--------ILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTS-FGE 60

  Fly   127 IKTAKVILD-SLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK---PKSELGG 187
            :..|.||.| ..|.|:|:|||.|..||...:|:.:|:|. .|..:.|::..|..:   |:|..||
plant    61 VTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGK-ELNGRQIRVNLATERSSAPRSSFGG 124

  Fly   188 AVGEGNTNYGYGSGMTAAGG 207
            ..|     ||.|.|    ||
plant   125 GGG-----YGGGGG----GG 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:410022 6/23 (26%)
RRM2_SECp43_like 99..178 CDD:409781 29/81 (36%)
Trnau1ap 210..330 CDD:465438
GRP4NP_189025.1 PLN03134 1..122 CDD:178680 41/126 (33%)
Blue background indicates that the domain is not in the aligned region.

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