Protein Alignment Secp43 and AT2G46780

DIOPT Version :10

• Sequence 1: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_182201.4
• Gene: AT2G46780 / 819291
• AraportID: AT2G46780
• Length: 336
• Species: Arabidopsis thaliana
• Alignment Length: 264
• Identity: 67/264 - (25%)
• Similarity: 92/264 - (34%)
• Gaps: 78/264 - (29%)

  Fly    97 EREFSVWVGDLSSDVDDYQLYKVF----------------SSKFTSIKTAKVILD-SLGFSKGYG 144
            :|:|.:..|  :::..|.:|.|:|                ..:|..|..|.||.| :.|.|||||
plant     4 QRQFQMEGG--NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYG 66

  Fly   145 FVRFGIEDEQKSALYDMNGYI-GLGTKPIKICNAVPKPKSELGGAVGEGN-TNYGYGSGMTA--- 204
            ||.|...:....|..:||..| |........|....||:.......|.|. .:.|.|.|:.|
plant    67 FVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVGLVAPSP 131

  Fly   205 --AGGTDYS------------QYYDPTSTY-WQGY------------------QAWQGYYEQAGA 236
              .|.:..|            |:..|.||| :.||                  |.:..|.....|
plant   132 QFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHHLYGGQQFSPYMGHPSA 196

  Fly   237 SITDA----AAYYQQ---AMSQSHSNPQTLAQHAEAWSAQRSA-------QYEQ-------QQQQ 280
            ..|..    ..||.|   |.|.:.:..|..|||.:.:|.|.:|       ||..       ..||
plant   197 GSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAPPAPPLLQYPYLPHQPHFSSQQ 261

  Fly   281 QTAS 284
            |.:|
plant   262 QFSS 265

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022
		RRM2_SECp43_like	99..178	CDD:409781	27/96 (28%)
		Trnau1ap	210..330	CDD:465438	30/127 (24%)
AT2G46780	NP_182201.4	RRM_RBM24_RBM38_like	22..97	CDD:409818	22/74 (30%)
		PABP-1234	<38..252	CDD:130689	56/213 (26%)