DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Secp43 and Trnau1ap

DIOPT Version :9

Sequence 1:	NP_608837.2	Gene:	Secp43 / 33652	FlyBaseID:	FBgn0031607	Length:	336	Species:	Drosophila melanogaster
Sequence 2:	NP_075416.1	Gene:	Trnau1ap / 65241	RGDID:	619995	Length:	287	Species:	Rattus norvegicus

Alignment Length:	324	Identity:	127/324 - (39%)
Similarity:	166/324 - (51%)	Gaps:	51/324 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly     8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKP 72
            ||||.||.||.||||..||..|||...:|:::||:.||.|||||||.|.....|...:||:||||
  Rat     5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69

  Fly    73 IPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSL 137
            :||..|..||:||.|:.. |.|.|..|:|::||||:.||||..||:.|...:.|.:..||:||..
  Rat    70 LPGATPAKRFKLNYATYG-KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT 133

  Fly   138 GFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGYGSGM 202
            |.|||||||:|..|.|||.||.:..|.:|||.||:::..|:||                     .
  Rat   134 GVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK---------------------A 177

  Fly   203 TAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMSQSHSNPQTLAQHAEAWS 267
            :.....:|||.|  :.:|.|.||.:|.||.|.|        |.|...|.|:|.||
  Rat   178 SRVKPVEYSQMY--SYSYNQYYQQYQNYYAQWG--------YDQNTGSYSYSYPQ---------- 222

  Fly   268 AQRSAQYEQQQQQQTASAANGAEDENGLVEHKFVLDVDKLNREAIDADRRLYDALESSKWLPIE 331
                ..|.|...|......:.|     |.:....|||.:.|:|.::....|||||....|.|::
  Rat   223 ----YGYTQSTMQTYEEVGDDA-----LEDPAPQLDVTEANKEFMEQSEELYDALMDCHWQPLD 277

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:241054	45/81 (56%)
Secp43	NP_608837.2	RRM2_SECp43	99..180	CDD:241056	40/80 (50%)
Trnau1ap	NP_075416.1	RRM1_SECp43	4..87	CDD:410022	45/81 (56%)
		RRM2_SECp43	95..176	CDD:410024	40/80 (50%)
		Trnau1ap	<205..284	CDD:407550	26/100 (26%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	85	1.000	Domainoid score	I8035
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H49509
Inparanoid	1	1.050	203	1.000	Inparanoid score	I3680
OMA	1	1.010	-	-		QHG47468
OrthoDB	1	1.010	-	-		D514475at33208
OrthoFinder	1	1.000	-	-		FOG0001306
OrthoInspector	1	1.000	-	-		oto97826
orthoMCL	1	0.900	-	-		OOG6_102296
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1010
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	12	11.880