DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and RBM38

DIOPT Version :10

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_001278709.1 Gene:RBM38 / 55544 HGNCID:15818 Length:271 Species:Homo sapiens


Alignment Length:251 Identity:60/251 - (23%)
Similarity:90/251 - (35%) Gaps:75/251 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 GNEREFS---VWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILD-SLGFSKGYGF-VRFGIEDEQ 154
            |::::.:   ::||.|.....|..|.|.|.. |..|:.|.||.| ..|.|:|||| :.|.:|...
Human    26 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFGIIFVLEGHI 89

  Fly   155 KSAL-YDMN----GYIGLGTKPIKICNAV--------------------------PKPKS-ELGG 187
            ..|| :|..    |.|.:|...:.:.:..                          .||:| :.|.
Human    90 SQALNFDGRSWNPGGIFVGEPQVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGF 154

  Fly   188 AVG------------EGNT-NYGYGSGMTAAG-----------GTDYSQYYDPTSTYWQGYQAWQ 228
            |:|            .|.| :|.|...:....           .:.|.:|...:..|.|...|..
Human   155 AIGVQQLHPTLIQRTYGLTPHYIYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQYPPATY 219

  Fly   229 GYYEQAGASITDAAAY----YQQAMSQSHSNPQTLAQHAEAWSAQRSAQYEQQQQQ 280
            ..|..| ||...||::    |..|:      ||.|:..|.|.:.  ..||:..|.|
Human   220 DQYPYA-ASPATAASFVGYSYPAAV------PQALSAAAPAGTT--FVQYQAPQLQ 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:410022
RRM2_SECp43_like 99..178 CDD:409781 27/88 (31%)
Trnau1ap 210..330 CDD:465438 22/75 (29%)
RBM38NP_001278709.1 RRM_RBM24_RBM38_like 34..141 CDD:409818 27/107 (25%)
PABP-1234 <46..269 CDD:130689 56/231 (24%)
Blue background indicates that the domain is not in the aligned region.

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