DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and trnau1apa

DIOPT Version :9

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_001018445.1 Gene:trnau1apa / 553636 ZFINID:ZDB-GENE-050522-502 Length:314 Species:Danio rerio


Alignment Length:360 Identity:118/360 - (32%)
Similarity:165/360 - (45%) Gaps:92/360 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALD-AMHKLNGK 71
            ||||:||.||.|:||..||.:|||....:||:|:|.||:.|||.||. ::||.|:: .:.|:|||
Zfish     4 LWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVE-LADDTAVERCLRKVNGK 67

  Fly    72 PIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDS 136
            |:||..|..||:| |.|| |...|....||::|.||:.||||..||:.|...|:|..:.|::||:
Zfish    68 PLPGATPPKRFKL-SRSN-YG
KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDA 130

  Fly   137 LGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNA---VPKPKSELGGAVGEGNTNYGY 198
            .|.||..|||.|..|.|||.||.|:.|..|||.|.:::..|   |.|.|        |.:.|   
Zfish   131 NGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVNKKK--------ESSEN--- 184

  Fly   199 GSGMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMSQ----------SH 253
                                      |.||.:.:...||..: ..||.|.:|.          .:
Zfish   185 --------------------------QIWQYHSDSKNASFIN-QYYYPQNLSYLSTYDWNYSLDY 222

  Fly   254 SNPQTLAQHAEAWSAQRSAQYEQQQQQQTASAANGAEDENGLVEHKFVLDVDKLNREAIDADRRL 318
            .||           :|.:...:..|.:||       ||:: |......::|.:.|...:.....|
Zfish   223 LNP-----------SQNTTPVDVTQSEQT-------EDDD-LEYPDSEINVTEANETFMAQSEEL 268

  Fly   319 YDAL----------------ESSKWL--PIEQLEV 335
            |.||                .:|.:|  ||.|.|:
Zfish   269 YSALIGCFFQPPESWDGVTCSASSYLPEPINQYEM 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:241054 43/82 (52%)
RRM2_SECp43 99..180 CDD:241056 38/83 (46%)
trnau1apaNP_001018445.1 RRM_SF 3..86 CDD:302621 44/84 (52%)
RRM2_SECp43 93..174 CDD:241056 37/80 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581899
Domainoid 1 1.000 75 1.000 Domainoid score I9019
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 185 1.000 Inparanoid score I3929
OMA 1 1.010 - - QHG47468
OrthoDB 1 1.010 - - D514475at33208
OrthoFinder 1 1.000 - - FOG0001306
OrthoInspector 1 1.000 - - otm25614
orthoMCL 1 0.900 - - OOG6_102296
Panther 1 1.100 - - O PTHR47640
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1010
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.910

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