Protein Alignment Secp43 and cirbpa

DIOPT Version :10

• Sequence 1: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_001017797.1
• Gene: cirbpa / 550495
• ZFINID: ZDB-GENE-050417-329
• Length: 185
• Species: Danio rerio
• Alignment Length: 252
• Identity: 56/252 - (22%)
• Similarity: 80/252 - (31%)
• Gaps: 107/252 - (42%)

  Fly     7 QLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGK 71
            :|::|.|....||..:..||.|.|. .|.|.:.||:.|....|:.||.|.:.|.|.||:..:|||
Zfish     6 KLFIGGLSFDTTEQSLEDAFSKYGV-ITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGK 69

  Fly    72 PIPGTNPIVRFRLNSA-------------SNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSK 123
            .:.|..    .|::.|             ..||:..|.
Zfish    70 SVDGRT----IRVDEAGKGGGGGGGRSGGGGSYRGGGG--------------------------- 103

  Fly   124 FTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGA 188
                          |...|.||.|.|                              :.:...||.
Zfish   104 --------------GRGGGGGFFRGG------------------------------RGRGGGGGG 124

  Fly   189 VGEGNTNY----------GY---GSGMTAAGGTDY-----SQYYDPTSTYWQGYQAW 227
            .|.|:.:|          ||   |.|.::.||..|     |.|.|.:|:|..||.::
Zfish   125 YGGGDRSYGDRSYGGGGGGYKSGGGGYSSGGGGGYNRDRGSGYGDRSSSYKDGYDSY 181

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022	28/95 (29%)
		RRM2_SECp43_like	99..178	CDD:409781	6/78 (8%)
		Trnau1ap	210..330	CDD:465438	8/23 (35%)
cirbpa	NP_001017797.1	RRM_SF	5..83	CDD:473069	28/81 (35%)