DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Secp43 and Boll

DIOPT Version :9

Sequence 1:	NP_608837.2	Gene:	Secp43 / 33652	FlyBaseID:	FBgn0031607	Length:	336	Species:	Drosophila melanogaster
Sequence 2:	XP_006245003.1	Gene:	Boll / 501143	RGDID:	1559527	Length:	340	Species:	Rattus norvegicus

Alignment Length:	200	Identity:	50/200 - (25%)
Similarity:	82/200 - (41%)	Gaps:	41/200 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    74 PGTNPIVRFRLNSASNSYK----LPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVIL 134
            |..||:....||:.::..:    :|..     ::||.:....::..|.|.| |::.|:|..|::.
  Rat    20 PSPNPVSPVPLNNPTSGPRYGTVIPNR-----IFVGGIDFKTNENDLRKFF-SQYGSVKEVKIVN 78

  Fly   135 DSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK-----PKSELGGAVG---- 190
            |..|.||||||:.|..:::.:..|.:.. .:....|.:.|..|:.|     |:|.:..|.|
  Rat    79 DRAGVSKGYGFITFETQEDAQKILQEAE-KLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYL 142

  Fly   191 EGNTNYGYGSGMTAAGGTDYSQYYDPTST--YWQG-------YQAWQGYYEQAGASITDAAAYYQ 246
            ..:|.|.|    |...|..|....:.||.  .|..       ....|..|:|        .||:.
  Rat   143 TTSTGYPY----TYHNGVAYFHTPEVTSVPPSWPSRSISSSPVMVAQPVYQQ--------PAYHY 195

  Fly   247 QAMSQ 251
            ||.:|
  Rat   196 QAPAQ 200

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:241054	5/15 (33%)
Secp43	NP_608837.2	RRM2_SECp43	99..180	CDD:241056	22/80 (28%)
Boll	XP_006245003.1	RRM_BOULE	43..123	CDD:410074	23/86 (27%)
Boll	XP_006245003.1	PABP-1234	<45..293	CDD:130689	43/174 (25%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910