Protein Alignment Secp43 and rbm38

DIOPT Version :10

• Sequence 1: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_001006916.1
• Gene: rbm38 / 448763
• XenbaseID: XB-GENE-489545
• Length: 219
• Species: Xenopus tropicalis
• Alignment Length: 205
• Identity: 58/205 - (28%)
• Similarity: 73/205 - (35%)
• Gaps: 29/205 - (14%)

  Fly   102 VWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILD-SLGFSKGYGFVRFGIEDEQKSALYDMNGYI 165
            ::||.|.....|..|.|.| ..|..|..|.||.| ..|.|:|||||........:.|..|.|..|
 Frog    13 IFVGGLPYHTTDASLRKYF-EVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPII 76

  Fly   166 G----------LGTKPIKICNAVPKPKSELGGAVGE---GNT-NYGYGSGMTAAG---GTDYSQY 213
            .          ||.||..:.:|......:|..|..:   |.| .|.|...:....   .|.....
 Frog    77 DGRKANVNLAYLGAKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYIYPPAIVQPSVVIPTPIPSL 141

  Fly   214 YDPTSTYWQGYQAWQGY----YEQAGASITDAAAY----YQQAMSQSHSNPQTLAQHAEAWSAQR 270
            ..|...|....||:..|    |||...:.:.|..|    |..|:.|..|...|.|......:|.
 Frog   142 QSPYIDYNAATQAFTHYTTAAYEQYPYAASPATGYMGYGYTSAVQQPLSATTTTATTGAPPTAY- 205

  Fly   271 SAQYEQQQQQ 280
             .||:.||.|
 Frog   206 -IQYQPQQLQ 214

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022
		RRM2_SECp43_like	99..178	CDD:409781	28/86 (33%)
		Trnau1ap	210..330	CDD:465438	22/79 (28%)
rbm38	NP_001006916.1	RRM_RBM24_RBM38_like	11..86	CDD:409818	24/73 (33%)
		PABP-1234	<23..187	CDD:130689	45/164 (27%)