DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and rbm34

DIOPT Version :10

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_001002382.1 Gene:rbm34 / 436655 ZFINID:ZDB-GENE-040718-77 Length:411 Species:Danio rerio


Alignment Length:209 Identity:53/209 - (25%)
Similarity:94/209 - (44%) Gaps:29/209 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LWMGSLESYMTENFIIAAFRKMG------------EDPTTVR----LMRNKYTGEPAGYCFVNFI 56
            :::|:|.|...:..:::.|:|.|            ||||..|    :.|..:..:.....::.|.
Zfish   151 VFVGNLPSSCKKKDLLSVFKKSGVIESVRFRSVIREDPTMSRKVAAIQRKVHPKKQNINAYIVFK 215

  Fly    57 SDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFS 121
            .::.|.||: |.||..|.....|   |::..|...|   ::.:.|::||:|..|:.:..|...| 
Zfish   216 EEESATDAL-KWNGHEIQAGFYI---RVDRVSQHSK---HDHKRSIFVGNLPYDISELPLQNHF- 272

  Fly   122 SKFTSIKTAKVILD-SLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSEL 185
            .:..:|:..:::.| ..|..||:|:|.|...|....|| .:||.. |..:.|::..:|.|.|.:.
Zfish   273 QECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLAL-KLNGST-LQQRKIRVKRSVKKEKEKK 335

  Fly   186 --GGAVGEGNTNYG 197
              .|...||....|
Zfish   336 TPPGRKAEGQRTGG 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:410022 23/97 (24%)
RRM2_SECp43_like 99..178 CDD:409781 22/79 (28%)
Trnau1ap 210..330 CDD:465438
rbm34NP_001002382.1 RRM1_RBM34 149..240 CDD:409828 22/92 (24%)
RRM2_RBM34 253..325 CDD:409829 22/74 (30%)
Blue background indicates that the domain is not in the aligned region.

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