DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and Rb97D

DIOPT Version :9

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster


Alignment Length:335 Identity:69/335 - (20%)
Similarity:108/335 - (32%) Gaps:64/335 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISD---DHALD-AMHK 67
            :|::|.|..|.||..:...:.:.|: ...|.:||:..|....|:.|:.:...   |.|.: ..|.
  Fly    33 KLFIGGLAPYTTEENLKLFYGQWGK-VVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHI 96

  Fly    68 LNGKPIPGTNPIVRFRLNSASNSYKLPGNEREF--------SVWVGDLSSDVDDYQLYKVFSSKF 124
            ::||.:....              .||..|||.        .::||.|..:.|:..|.:.| .:|
  Fly    97 IDGKTVEAKR--------------ALPRPERESRETNISVKKLFVGGLKDNHDEECLREYF-LQF 146

  Fly   125 TSIKTAKVILD-SLGFSKGYGFVRFGIEDEQKSALYDMN---GYIGLGTKPIKICNAVPKPKSEL 185
            .::.:.|::.| :.|..:|:.||.|...|....|:....   .|:.:..|. .|.|...|.|.:.
  Fly   147 GNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKK-SIYNLDKKEKQQP 210

  Fly   186 GGAVGE-----GNTNYGYGSGMTAAGGT-----------------DYSQYYDPTS--------TY 220
            ||....     .......|.|.....|.                 .|.|...|..        .|
  Fly   211 GGLANAIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNY 275

  Fly   221 W-QGYQAWQGYYEQAGASITDAAAYYQQAMSQSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQTAS 284
            | ....|...||:|......:....|........:.|......|:.|.|.:.......||.....
  Fly   276 WGPPPPAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVG 340

  Fly   285 AANGAEDENG 294
            |.......||
  Fly   341 AVPPPMGHNG 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:241054 18/86 (21%)
RRM2_SECp43 99..180 CDD:241056 21/92 (23%)
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 19/91 (21%)
RRM2_hnRNPA_like 124..196 CDD:240774 17/72 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463922
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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