Protein Alignment Secp43 and sqd

DIOPT Version :10

• Sequence 1: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 260
• Identity: 59/260 - (22%)
• Similarity: 100/260 - (38%)
• Gaps: 64/260 - (24%)

  Fly     7 QLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAM-----H 66
            :|::|.|....||..:...|.|.|| ..::.:..:..||...|:.|:.| ::..|:|.:     |
  Fly    57 KLFVGGLSWETTEKELRDHFGKYGE-IESINVKTDPQTGRSRGFAFIVF-TNTEAIDKVSAADEH 119

  Fly    67 KLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAK 131
            .:|.|.:....                 ...|...::||.|::::.|.:: |.:..:|.:|...:
  Fly   120 IINSKKVDPKK-----------------AKARHGKIFVGGLTTEISDEEI-KTYFGQFGNIVEVE 166

  Fly   132 VILD-SLGFSKGYGFVRFGIE----DEQKSALYDMNGYIGLGTKPIKICNAVPKPKSEL------ 185
            :..| .....||:.|:.|..|    |..|:....:.|      |.:.:..|.|||::::
  Fly   167 MPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAG------KEVDVKRATPKPENQMMGGMRG 225

  Fly   186 ----------GGAVGEGNTNY---------GYGSGMTAAGGTDYSQYYDPTSTYWQGYQ-AWQGY 230
                      ||..|.|..|.         |||.|....|...|..||  ...|:.||. .:.||
  Fly   226 GPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYY--AGGYYNGYDYGYDGY 288

  Fly   231  230
              Fly   289  288

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022	19/87 (22%)
		RRM2_SECp43_like	99..178	CDD:409781	17/83 (20%)
		Trnau1ap	210..330	CDD:465438	8/22 (36%)
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	19/72 (26%)
		RRM2_hnRNPD_like	137..211	CDD:240775	17/80 (21%)