Protein Alignment Secp43 and Rbm39

DIOPT Version :10

• Sequence 1: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: XP_006235393.1
• Gene: Rbm39 / 362251
• RGDID: 1310071
• Length: 530
• Species: Rattus norvegicus
• Alignment Length: 277
• Identity: 62/277 - (22%)
• Similarity: 110/277 - (39%)
• Gaps: 67/277 - (24%)

  Fly    36 VRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKPIPGTNPIV-------RFRLNSASNSYKL 93
            ||::.::.:....|..:|.|: |..::.....|.|:.:.|. ||:       :.|..:.:|:.:
  Rat   182 VRMISDRNSRRSKGIAYVEFV-DVSSVPLAIGLTGQRVLGV-PIIVQASQAEKNRAAAMANNLQ- 243

  Fly    94 PGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDS-LGFSKGYGFVRFGIEDEQKSA 157
            .|:.....::||.|..::.:..|..:| ..|..|::.::::|| .|.||||||:.|...:..|.|
  Rat   244 KGSAGPMRLYVGSLHFNITEDMLRGIF-EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

  Fly   158 LYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGYGSGMTAAGGTDYSQYYDPTSTYWQ 222
            |..:||: .|..:|:|:                      |:.:..|.|...  |.:.|...
  Rat   308 LEQLNGF-ELAGRPMKV----------------------GHVTERTDASSA--SSFLDSDE---- 343

  Fly   223 GYQAWQGYYEQAGASITDAAAYYQQAMSQSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQTASAAN 287
                    .|:.|..:......            |.:|:.||....| .....||..|.:.|.|.
  Rat   344 --------LERTGIDLGTTGRL------------QLMARLAEGTGLQ-IPPAAQQALQMSGSLAF 387

  Fly   288 GAEDENGLVEHKFVLDV 304
            ||     :.|..||:|:
  Rat   388 GA-----VAEFSFVIDL 399

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022	12/60 (20%)
		RRM2_SECp43_like	99..178	CDD:409781	25/79 (32%)
		Trnau1ap	210..330	CDD:465438	20/95 (21%)
Rbm39	XP_006235393.1	SF-CC1	46..518	CDD:273721	62/277 (22%)