DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and tia1l

DIOPT Version :9

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_956476.1 Gene:tia1l / 323447 ZFINID:ZDB-GENE-030131-2167 Length:342 Species:Danio rerio


Alignment Length:344 Identity:86/344 - (25%)
Similarity:140/344 - (40%) Gaps:85/344 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LWMGSLESYMTENFIIAAFRKMGEDP-TTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGK 71
            |::|:|...:||..|:..|.::|  | .:.:::.:....:|  ||||.|..:.||..|:..:||:
Zfish    11 LYVGNLSRDVTEALILQVFSQIG--PCKSCKMILDTTGNDP--YCFVEFYENRHAAAALAAMNGR 71

  Fly    72 PIPGTNPIVRFRLNSASNSYKLPGNERE-----FSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAK 131
            .|.|.:    .::|.||.    |.::::     |.|:|||||.::....:...| :.|..|..|:
Zfish    72 KILGKD----MKVNWAST----PSSQKKDTSNHFHVFVGDLSPEISTDDVRAAF-APFGKISDAR 127

  Fly   132 VILD-SLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTN 195
            |:.| :.|.||||||:.|..:.:.:||:..|||. .||.:.|:...|..||.:......|..:.:
Zfish   128 VVKDLATGKSKGYGFISFINKWDAESAIQQMNGQ-WLGGRQIRTNWATRKPSAPKSNNEGASSKH 191

  Fly   196 YGYGS--------------GMTAAGGTD--YSQYYDPTSTYWQ-------GY-----QAWQG--- 229
            ..|..              |..|:|.:|  ..|.:.|.....:       ||     .:.:|   
Zfish   192 LSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAH 256

  Fly   230 -----------------YYEQAGASI--------------TDAAAYYQQAMSQSHSNPQTLAQHA 263
                             |:.:..|.:              |.||..|.| ..||:.|.|.:.|:.
Zfish   257 AIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQNKPTYAAQPYGQ-WGQSYGNGQQMGQYV 320

  Fly   264 -EAWSAQRSAQYEQQQQQQ 281
             ..|.......|.|...||
Zfish   321 PNGWQMPTYGVYGQAWNQQ 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:241054 25/82 (30%)
RRM2_SECp43 99..180 CDD:241056 30/86 (35%)
tia1lNP_956476.1 ELAV_HUD_SF 7..272 CDD:273741 69/274 (25%)
RRM_SF 10..90 CDD:302621 26/90 (29%)
RRM2_TIA1 96..175 CDD:241062 30/80 (38%)
RRM3_TIAR 206..278 CDD:241064 10/71 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1842
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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