DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and csx1

DIOPT Version :10

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_594243.1 Gene:csx1 / 2542151 PomBaseID:SPAC17A2.09C Length:632 Species:Schizosaccharomyces pombe


Alignment Length:202 Identity:74/202 - (36%)
Similarity:107/202 - (52%) Gaps:20/202 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPA--GYCFVNFISDDHALDAMHKLNG 70
            ||||.||.:|...||...:..:.| |..|::||:|.:....  .||||.|.|...|..|:.|.|.
pombe    87 LWMGDLEPWMDATFIQQLWASLNE-PVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNN 150

  Fly    71 KPIPGTNPIVRFRLNSAS------NSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKT 129
            ..|||.:  ..|:||.|:      |::  ...:.|||::||||....:|..|:..|.|.:.|..:
pombe   151 TMIPGAH--CTFKLNWATGGGIQHNNF--VSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTS 211

  Fly   130 AKVILDSL-GFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELG-----GA 188
            ||:|:|.: |.|:.||||||..|.||:.||..|.||:..| :|::|..|.||.::.:.     |.
pombe   212 AKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQG-RPLRISVASPKSRASIAADSALGI 275

  Fly   189 VGEGNTN 195
            |....:|
pombe   276 VPTSTSN 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:410022 32/89 (36%)
RRM2_SECp43_like 99..178 CDD:409781 35/79 (44%)
Trnau1ap 210..330 CDD:465438
csx1NP_594243.1 RRM1_NGR1_NAM8_like 86..168 CDD:410023 32/83 (39%)
RRM2_NGR1_NAM8_like 181..260 CDD:410025 35/79 (44%)
half-pint <217..>577 CDD:130706 26/67 (39%)
RRM3_NGR1_NAM8_like 296..367 CDD:409782
Blue background indicates that the domain is not in the aligned region.

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