Protein Alignment Secp43 and usp109

DIOPT Version :10

• Sequence 1: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_596836.2
• Gene: usp109 / 2540117
• PomBaseID: SPBC1289.12
• Length: 365
• Species: Schizosaccharomyces pombe
• Alignment Length: 273
• Identity: 56/273 - (20%)
• Similarity: 111/273 - (40%)
• Gaps: 55/273 - (20%)

  Fly     8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKP 72
            ||:.:||.:|.|::|.|.|    |:...|....:..:|.....|.:.|.|.|.|.:|:.:.:.:.
pombe     5 LWLNNLEEWMNEDYIRAIF----ENVRKVNYYEDGESGAILKTCCIEFESQDAARNALERQSTQR 65

  Fly    73 IPGTNPIVRFRLNSASN----SYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVI 133
            :...|||   .|:....    ||        :.:::.::..:|.:..:..:| .::..| :|:|:
pombe    66 LISGNPI---SLDVVPEWQKPSY--------YMLFISNIDPEVSENDIKYLF-QRYNFI-SARVL 117

  Fly   134 LDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGY 198
            ....|.|....|:....|.:.::|..:|.|...|  |...:.::|...|:....:.|      .|
pombe   118 RCVDGTSTSIAFIWLANESDIQNAQVEMQGAFCL--KRSILVHSVKSDKNTYLSSPG------FY 174

  Fly   199 GSGMTAAGGTDYSQYYDPTSTYWQGY--------QAWQGYYEQAG-----------ASITDAAAY 244
            |:..      ..:|:.||.:|....:        |..:.|:...|           ..|..|..|
pombe   175 GTPQ------PLNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRY 233

  Fly   245 Y-QQAMSQSHSNP 256
            : :||:::.::.|
pombe   234 FAEQAINEMNNFP 246

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022	22/85 (26%)
		RRM2_SECp43_like	99..178	CDD:409781	14/78 (18%)
		Trnau1ap	210..330	CDD:465438	13/67 (19%)
usp109	NP_596836.2	PABP-1234	4..>243	CDD:130689	55/268 (21%)
		RRM_SF	188..256	CDD:473069	10/59 (17%)