DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and ELAVL2

DIOPT Version :9

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:XP_011516080.2 Gene:ELAVL2 / 1993 HGNCID:3313 Length:392 Species:Homo sapiens


Alignment Length:166 Identity:50/166 - (30%)
Similarity:89/166 - (53%) Gaps:15/166 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKPIPGTN 77
            |...||:..:.:.|..:|| ..:.:|:|:|.||:..||.|||:|....|..|::.|||       
Human    78 LPQNMTQEELKSLFGSIGE-IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG------- 134

  Fly    78 PIVRFRLNSASNSYKLPGNE--REFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSL-GF 139
              :|.:..:...||..|.:.  |:.:::|..|...:...:|.::| |::..|.|:::::|.: |.
Human   135 --LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGI 196

  Fly   140 SKGYGFVRFGIEDEQKSALYDMNGYIGLG-TKPIKI 174
            |:|.||:||....|.:.|:..:||....| |:||.:
Human   197 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:241054 23/76 (30%)
RRM2_SECp43 99..180 CDD:241056 23/78 (29%)
ELAVL2XP_011516080.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D775799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.920

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