Protein Alignment Secp43 and sqd-1

DIOPT Version :10

• Sequence 1: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 311
• Identity: 74/311 - (23%)
• Similarity: 118/311 - (37%)
• Gaps: 67/311 - (21%)

  Fly     7 QLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKY---TGEPAGYCFVNFISDDH---ALDAM 65
            ::::|.:...:....:.:.|.:.||    |...:.||   .|...|:.||.|.:.:.   ||.|.
 Worm    30 KIFVGGISPEVNNEDLSSHFTQYGE----VAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90

  Fly    66 HK-LNGKPIPGTNPIVRFRLNSASNSYKLPGNERE-FSVWVGDLSSDVDDYQLYKVFSSKFTSIK 128
            .: :.||.:.     |:            |...|| ..|:||.|.||..:..|...| .:|..:.
 Worm    91 EQTIKGKSVE-----VK------------PAKSRENKKVFVGGLPSDYSEQDLRSHF-EQFGKVD 137

  Fly   129 TAKVILD-SLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGE- 191
            ..:...| .....:.:.|:.|  |:|:.:...........||:...:..|||:.| ...||.|.
 Worm   138 DIEWPFDKQTKARRNFAFIVF--EEEESADKASSQTKQTFGTRECDVKKAVPQGK-RFPGAQGRM 199

  Fly   192 -----------GNTNYGYGSGMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYY 245
                       ||.|.|:.:|....|...|.    .|...|..:.. .|||.|.|     ||.:.
 Worm   200 PGGRGMYGGRGGNNNSGWYAGWGQIGAMPYG----ATGAAWGDWYG-NGYYGQQG-----AAHHN 254

  Fly   246 QQAMSQSH-SNPQTLAQHAEAWSAQRS----------AQYEQQQQQQTASA 285
            ....||.: |..|:.|.:...:..|::          .:::||.|||||.|
 Worm   255 NSGSSQGYGSGYQSFAGNNSGFDYQQAQGARQGNNGQPRFQQQPQQQTAQA 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022	18/89 (20%)
		RRM2_SECp43_like	99..178	CDD:409781	17/80 (21%)
		Trnau1ap	210..330	CDD:465438	24/87 (28%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	18/94 (19%)
		RRM_SF	111..185	CDD:473069	16/76 (21%)