DRSC/TRiP Functional Genomics Resources

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Protein Alignment Secp43 and Dazl

DIOPT Version :9

Sequence 1:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster
Sequence 2:XP_006523646.1 Gene:Dazl / 13164 MGIID:1342328 Length:408 Species:Mus musculus


Alignment Length:210 Identity:48/210 - (22%)
Similarity:77/210 - (36%) Gaps:52/210 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 SASNSYKLP-GNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFG 149
            :.|..|.|| |.....:|:||.:...:|:.:: :.|.:::.|:|..|:|.|..|.|||||||.|.
Mouse   135 TTSQGYVLPEGKIMPNTVFVGGIDVRMDETEI-RSFFARYGSVKEVKIITDRTGVSKGYGFVSFY 198

  Fly   150 IE-DEQKSALYDMNGY-----IGLGTKPIKIC-----------NAVPKPKSELGGAVGEGNTNYG 197
            .: |.||.....:|.:     :|...:...:|           |..|.|:               
Mouse   199 NDVDVQKIVESQINFHGKKLKLGPAIRKQNLCTYHVQPRPLIFNPPPPPQ--------------- 248

  Fly   198 YGSGMTAAGGTDYSQ---YYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMSQSHSNPQTL 259
            :.|..::.....|.|   ..:|.:.|.|.|..:.       :|.......||..:......||  
Mouse   249 FQSVWSSPNAETYMQPPTMMNPITQYVQAYPPYP-------SSPVQVITGYQLPVYNYQMPPQ-- 304

  Fly   260 AQHAEAWSAQRSAQY 274
                  |.|.....|
Mouse   305 ------WPAGEQRSY 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:241054 1/3 (33%)
RRM2_SECp43 99..180 CDD:241056 26/97 (27%)
DazlXP_006523646.1 RRM_DAZL 145..226 CDD:241116 25/81 (31%)
PABP-1234 <150..318 CDD:130689 43/195 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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