DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3652 and Yipf4

DIOPT Version :10

Sequence 1:NP_608828.2 Gene:CG3652 / 33643 FlyBaseID:FBgn0031600 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001009712.1 Gene:Yipf4 / 362699 RGDID:1310157 Length:246 Species:Rattus norvegicus


Alignment Length:232 Identity:65/232 - (28%)
Similarity:107/232 - (46%) Gaps:48/232 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 EDVNTS---PSLEGDMSIPGK--RTTTATSASGVPEYNTL----------DEPIRETVLRDIRAV 58
            ||::.|   |.::.::.:.|.  :.:|||:......|..|          ::|:.|.:..|::.:
  Rat    26 EDLSGSIAAPDVKLNLGVSGDFIKESTATTFLRQRGYGWLLEVEDEDPEDNKPLLEELDIDLKDI 90

  Fly    59 GIKFYHVLYPKE----KSSLLRD-WDLWGPLVLCTFMATI-LQGSSTADSMSDNGPEFAQV--FV 115
            ..|...||.|..    ...::|| .|.||||.:..|.:.| |.|            :|..|  .:
  Rat    91 YYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLYG------------QFRVVSWII 143

  Fly   116 IVWI-GAAVVTLNSKLLGGNISFFQSVCVLGYCLTPVAISLIVCRVILLATQTRLLFFLRFVTTT 179
            .:|| |:..:.|.:::|||.:::.|.:.|:||.|.|    |||...|||...:     ...|:|.
  Rat   144 TIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLP----LIVIAPILLVVGS-----FEMVSTL 199

  Fly   180 I---GFAWATYASFVFLGQSQPPHRKPLAVYPIFLFF 213
            |   |..||.|::...|...:...:|||.:|||||.:
  Rat   200 IKLFGVFWAAYSAASLLVGEEFKTKKPLLIYPIFLLY 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3652NP_608828.2 YIP1 <31..221 CDD:481248 59/205 (29%)
Yipf4NP_001009712.1 YIP1 <76..239 CDD:481248 55/182 (30%)

Return to query results.
Submit another query.