DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psf2 and psf2

DIOPT Version :9

Sequence 1:NP_001260022.1 Gene:Psf2 / 33641 FlyBaseID:FBgn0261976 Length:203 Species:Drosophila melanogaster
Sequence 2:NP_595493.1 Gene:psf2 / 2541194 PomBaseID:SPBC725.13c Length:183 Species:Schizosaccharomyces pombe


Alignment Length:178 Identity:58/178 - (32%)
Similarity:103/178 - (57%) Gaps:7/178 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PSIIEFIGEKCMISIIPNFSNEPLHLIYGPVGPFRAGFPVFVPLWMATHLRKQQKCRIVPPEWMD 67
            |..:||:.....|:|:|:.:.:.|.|:...:...:......||||:|..|:||...||||||||:
pombe    13 PEEMEFLAGNEYINIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARIVPPEWME 77

  Fly    68 MDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRTVIKDIFDIRESKLRTSI 132
            :..||.|:::|..::.|:::|. .::..|.|:::...||:...|::|.::.||.:.|:||.||.:
pombe    78 IGKLENIRDDELENETFSELPF-RWLETAHLLLNFCADDIEDVEDIRRILLDIREARQSKARTGL 141

  Fly   133 DAFIKGEGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQRTATASQRD 180
            :|..:.:.|   ||||..:||:.:|||....:|   |.::....||.:
pombe   142 EAINEVQLT---LDNLGAMEINEIRPIFREVMD---RMRKIVQVSQEE 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Psf2NP_001260022.1 GINS_B 2..63 CDD:425409 19/59 (32%)
GINS_A_psf2 55..174 CDD:212550 41/118 (35%)
psf2NP_595493.1 COG5093 1..183 CDD:227424 58/176 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 85 1.000 Domainoid score I2202
eggNOG 1 0.900 - - E1_COG5093
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41105
Inparanoid 1 1.050 103 1.000 Inparanoid score I1637
OMA 1 1.010 - - QHG54349
OrthoFinder 1 1.000 - - FOG0004322
OrthoInspector 1 1.000 - - oto100667
orthoMCL 1 0.900 - - OOG6_102798
Panther 1 1.100 - - LDO PTHR12772
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1018
SonicParanoid 1 1.000 - - X3593
TreeFam 1 0.960 - -
1413.860

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