DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17612 and RME1

DIOPT Version :10

Sequence 1:NP_608824.1 Gene:CG17612 / 33639 FlyBaseID:FBgn0031597 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_011558.1 Gene:RME1 / 852935 SGDID:S000003276 Length:300 Species:Saccharomyces cerevisiae


Alignment Length:317 Identity:66/317 - (20%)
Similarity:119/317 - (37%) Gaps:96/317 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 HQYGIPIATILSQYTGMPVEKGDS-------FSEYICV-----TCLDVV----KNAFDDLESKEN 253
            |.:|    ..:.:|:..|:| |||       .|...|:     ..:.|:    :.|:|...|.|.
Yeast    31 HDFG----QNMKEYSASPLE-GDSSLPSSLPSSTEDCLLLSLENTITVIAGNQRQAYDSTSSTEE 90

  Fly   254 TIQMYRQPKEEIID----IDSI--PVKNKPVDYEVTGKPPHRCPQCPKIFLLAAKLQAHIRTHNE 312
            ......:| :||.|    |.|:  |.....::|   |:.....|    :|:             |
Yeast    91 GTAPQLRP-DEIADSTHCITSLVDPEFRDLINY---GRQKGANP----VFI-------------E 134

  Fly   313 TRTTEPPRLKCPMCPSIYMKRGCLEAHMWIHRASDERESELEPPYRCPHCPKLFLYSSFLEIHIQ 377
            :.|||....:|.:                    ...::|.:...|   |.||:.           
Yeast   135 SNTTEQSHSQCIL--------------------GYPQKSHVAQLY---HDPKVL----------- 165

  Fly   378 THEDVSQRLSRKSSHKCAQCADVFSDVSSLKDHVKIHAGERTFKCPL--C---LMSFQEESNLKS 437
              ..:|:..:::.|:.|:.|::.|:.:.....|:.....||..|||:  |   ::.||:.:.|:.
Yeast   166 --STISEGQTKRGSYHCSHCSEKFATLVEFAAHLDEFNLERPCKCPIEQCPWKILGFQQATGLRR 228

  Fly   438 HDCAHTRFKCHKCSKFFESQNYLDFHFKKSHTTKGPFKCIKCQQTFQKRNGLKEHIS 494
            | ||..    |......|.:..|:...:|......||..  ||:||::::..|.|::
Yeast   229 H-CASQ----HIGELDIEMEKSLNLKVEKYPGLNCPFPI--CQKTFRRKDAYKRHVA 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17612NP_608824.1 zf-AD 187..>246 CDD:462262 12/56 (21%)
C2H2 Zn finger 290..310 CDD:275368 2/19 (11%)
C2H2 Zn finger 323..343 CDD:275370 1/19 (5%)
C2H2 Zn finger 359..379 CDD:275368 3/19 (16%)
C2H2 Zn finger 394..414 CDD:275368 4/19 (21%)
C2H2 Zn finger 422..438 CDD:275368 6/20 (30%)
C2H2 Zn finger 447..463 CDD:275368 3/15 (20%)
C2H2 Zn finger 476..505 CDD:275368 6/19 (32%)
C2H2 Zn finger 513..533 CDD:275368
C2H2 Zn finger 545..565 CDD:275368
C2H2 Zn finger 568..584 CDD:275368
RME1NP_011558.1 None
Blue background indicates that the domain is not in the aligned region.

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