DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17612 and Plzf

DIOPT Version :9

Sequence 1:NP_608824.1 Gene:CG17612 / 33639 FlyBaseID:FBgn0031597 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_001285862.1 Gene:Plzf / 34622 FlyBaseID:FBgn0032401 Length:469 Species:Drosophila melanogaster


Alignment Length:435 Identity:103/435 - (23%)
Similarity:157/435 - (36%) Gaps:101/435 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 IQDSVAEEELPVIKEEAIEGEDLQGEYFIITECL---------------EEPAIGSCRVCLEQSD 195
            |.|...|:.:.|.||..:...:| .:...:||.|               |.||.|..:...:...
  Fly    94 IVDFFYEDLVSVSKEHELHFREL-AQILAVTELLNLYQLQPLGEAKEATEIPAPGEAQPNPDPEK 157

  Fly   196 NLTNIFDDAHQYGIPIATILSQYTGMPVEKGDSFSEYICVTCLDVVKNAFDDLESKENTIQMYRQ 260
            ....:|::...|        .:.......|..|...| |:.|                       
  Fly   158 KAEAVFENRQSY--------FKLKNPRAVKSSSKVNY-CIGC----------------------- 190

  Fly   261 PKEEIIDIDSIPVKNKPVDYEVTGKPPHR-CPQCPKIFLLAAKLQAHIRTHN-ETRTTEPPRLKC 323
                  |.....|: |.:::..:.:|.|. |..|...||...:...|:|.|: :.|  :|  ..|
  Fly   191 ------DFKCYQVQ-KMIEHMGSCEPSHLICSLCEVGFLDWREYDTHLRRHSGDLR--KP--FFC 244

  Fly   324 PMCPSIYMKRGCLEAHMWIHRASDERESELEPPYRCPHCPKLFLYSSFLEIHIQTHEDVSQRLSR 388
            ..|...:..|..|..|...|        ..|.|:.||||.|.|.:...|..||..|....|.|  
  Fly   245 LQCGIRFNTRAALLVHQPKH--------STETPHICPHCGKGFKWKQGLSNHILVHNPEKQML-- 299

  Fly   389 KSSHKCAQCADVFSDVSSLKDHVKIHAGERTFKCPL--CLMSFQEESNLKSHDCAHTR---FKCH 448
                 |..|....:.:.:||.|..:|.|| .|.|.:  |......:.|||.|...|.:   |.|.
  Fly   300 -----CDVCGYSTTHMKALKSHKLLHTGE-FFACTVSGCKHRANRKENLKLHIETHKQGRDFICE 358

  Fly   449 KCS-KFFESQNYLDFHFKKSHTTKGP--FKCIKCQQTFQKRNGLKEHIS---SQVCVQFLRSKSP 507
            .|. ||.:|:| |..|..| ||..||  :||..|..:..:.:.:|||:.   ::..||...|::.
  Fly   359 VCGCKFSQSKN-LKRHALK-HTENGPNRYKCQLCGFSSHRSDKMKEHVQRVHTEKPVQLELSETV 421

  Fly   508 GQIFP----------CPKCPKKFSIEDNYQMHHATHKKVKTVIER 542
            ...||          .|| .|..|::.....:....|::||::.:
  Fly   422 DSSFPDDFELPVIETSPK-KKPKSVKSKTIRNVNPDKRLKTLLPK 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17612NP_608824.1 zf-AD 187..>246 CDD:285071 7/58 (12%)
C2H2 Zn finger 290..310 CDD:275368 6/19 (32%)
C2H2 Zn finger 323..343 CDD:275370 5/19 (26%)
zf-C2H2_8 356..438 CDD:292531 27/83 (33%)
C2H2 Zn finger 359..379 CDD:275368 9/19 (47%)
C2H2 Zn finger 394..414 CDD:275368 5/19 (26%)
C2H2 Zn finger 422..438 CDD:275368 5/17 (29%)
C2H2 Zn finger 447..463 CDD:275368 7/16 (44%)
C2H2 Zn finger 476..505 CDD:275368 7/31 (23%)
C2H2 Zn finger 513..533 CDD:275368 4/19 (21%)
C2H2 Zn finger 545..565 CDD:275368
C2H2 Zn finger 568..584 CDD:275368
PlzfNP_001285862.1 COG5048 <193..403 CDD:227381 67/232 (29%)
C2H2 Zn finger 214..234 CDD:275368 6/19 (32%)
C2H2 Zn finger 244..264 CDD:275368 5/19 (26%)
C2H2 Zn finger 272..292 CDD:275368 9/19 (47%)
C2H2 Zn finger 300..320 CDD:275368 5/19 (26%)
C2H2 Zn finger 330..349 CDD:275368 5/18 (28%)
C2H2 Zn finger 357..377 CDD:275368 9/21 (43%)
C2H2 Zn finger 387..408 CDD:275368 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446692
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.