DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf4 and ARI10

DIOPT Version :9

Sequence 1:NP_477416.1 Gene:Traf4 / 33638 FlyBaseID:FBgn0026319 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_180735.1 Gene:ARI10 / 817733 AraportID:AT2G31760 Length:514 Species:Arabidopsis thaliana


Alignment Length:501 Identity:90/501 - (17%)
Similarity:157/501 - (31%) Gaps:147/501 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 SSSSTVSSSHSSSHSSPTPGNNNNN--------------MPITELEQIIYPGPDPKHIMGSLVF- 105
            |....:.:.....::|...||.:.|              ..|.:.|:|:....|....:.:::| 
plant     4 SDDDMIDNESGEENNSDGGGNESYNYNAAVDTIILSEKSYVIIKEEEILKLQRDDIERVSTILFL 68

  Fly   106 -------CIHHKQGC------KW-SDE--LRKLKGHLNACKHD--ATQCPNKCGAQIPRIMMTDH 152
                   .:.|...|      :| :||  :||..|.|.....|  .|:...:||.........:.
plant    69 SQVEAIVLLLHYHWCVSKLEDEWFTDEERIRKTVGILKEPVVDVNGTEVDIQCGICFESYTRKEI 133

  Fly   153 LQYTCTMRRTRCEFCQSEFSGAGLEEHNG----SCGQEPVYCEAKCGQRILRGRMTLHKSKD--- 210
            ...:|  ....|:.|.:.:....:|:..|    .| .|| .|.|..||.:: ..:|..|.||   
plant   134 ASVSC--GHPYCKTCWTGYITTKIEDGPGCLRVKC-PEP-SCYAVVGQDMI-DEVTEKKDKDKYY 193

  Fly   211 ---------CAKRLRRC----AHCQREFSADTLPLHAAQC-----------PRAPLACPQ----- 246
                     ..|:::.|    ..|..||...:....|..|           ..:|:.|..     
plant   194 RYFLRSYVEDGKKMKWCPSPGCECAVEFGESSGYDVACLCSYRFCWNCSEDAHSPVDCETVSKWI 258

  Fly   247 -------------RCDAGPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKG-------------- 284
                         ..::.|.|:.:........|..:..|.|.....|...|              
plant   259 FKNQDESENKNWILANSKPCPKCKRPIEKSHGCNHMTCSASCGHRFCWICGKSYSDHYACNNYVE 323

  Fly   285 -----PRQMLEAHLE----------SNAAAHLSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLL 334
                 .|.:|::.::          .|.::.|..|..|...|..|::.|.....|..|:     |
plant   324 DADHDKRTLLQSEIKRYTHYYVRWVENQSSRLKAMSDLEKFQSVQLKQLSDNQCKPKID-----L 383

  Fly   335 WKITDWSAKMAEARGKDGLELVSPPFYTSQYGY------KLQASMFLNGNGP---------GENT 384
            ..|.|...::.|.|     .::.   :|..|||      |.....:|.|...         .||.
plant   384 QFIVDAWLQIIECR-----RVLK---WTYAYGYYLDNLAKRPLFEYLQGEAETGLERLHHCAENE 440

  Fly   385 HVSVYIKVL-PGE-YDAL-LKWPFSHSITFTLFEQGAQSGQGGVAE 427
            ....:||.. |.: ::|. :|......:|.|.|:...::.:.|:|:
plant   441 LKQFFIKSEDPSDTFNAFRMKLTGLTKVTKTYFDNLVKALENGLAD 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf4NP_477416.1 PLN03086 <109..206 CDD:178635 26/111 (23%)
zf-TRAF 233..292 CDD:424248 13/106 (12%)
MATH_TRAF4 331..479 CDD:239750 24/115 (21%)
ARI10NP_180735.1 RING-HC_RBR_TRIAD1_like 121..171 CDD:319537 10/53 (19%)
IBR 190..251 CDD:214763 9/60 (15%)
IBR <273..312 CDD:396187 7/38 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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