DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf4 and traf7

DIOPT Version :9

Sequence 1:NP_477416.1 Gene:Traf4 / 33638 FlyBaseID:FBgn0026319 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001073654.1 Gene:traf7 / 563746 ZFINID:ZDB-GENE-070112-2212 Length:639 Species:Danio rerio


Alignment Length:424 Identity:93/424 - (21%)
Similarity:153/424 - (36%) Gaps:129/424 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QWTKTLSFPSRLSPNRNSKDCSTLASPVPPPTPPRNKTTSGSGNCATSRSSSS-TVSSSHSSSHS 70
            |..:|.|..|.|:.:....|     ..:||.:.||             ||.|: :|.|.||.|:.
Zfish    24 QHRRTPSTSSTLTYSTRDDD-----DGMPPISTPR-------------RSDSAISVRSLHSESNM 70

  Fly    71 SPTPGNNNNNMPITELEQIIYP---GPDPKHIMGSLVFCIHHKQGC--KWSDELRKLKGH--LNA 128
            |     ..:...:.|.|:...|   ...|     |:..|.   |.|  .:.|.:....||  ...
Zfish    71 S-----LRSTFSLHEEEEDTEPQVFAEQP-----SVKLCC---QLCCSVFKDPVITTCGHTFCRR 122

  Fly   129 CKHDATQCP---NKCGAQIPRIMMTDHLQYTCTMRRTRCEF-CQSEFSGAGLEEHNGSCGQEPVY 189
            |...:.:||   :|....:..|.:.:.:....    ..|:: |:...||     .:|:...:|:.
Zfish   123 CALTSEKCPVDNSKLTVVVNNIAVAEQIGELF----IHCKYGCRPAASG-----KSGAYEVDPLG 178

  Fly   190 CEAKCGQRILRGRMTLHKSKDCAKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCDAGPIP 254
            |..         .:.|...||                      |...|...|:.||...:..|:.
Zfish   179 CPF---------TIKLSTRKD----------------------HEVSCDYRPVRCPNNPNCPPLL 212

  Fly   255 RGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLE-------------SNAAAHLSLMVA 306
            ...|||||: ||:.  :.|...:.||.|.|.:...|.|||             ::...| .:.|.
Zfish   213 TMNLEAHLK-ECEH--IKCPHSKYGCTFIGNQDTYETHLEVCKFEGLKEFLQQTDDRFH-EMQVT 273

  Fly   307 LSSRQGQQIQMLKSAVSKLS-----INYTGTLLWKITDWS-AKMAEARGKDGLELVSPPFYTSQY 365
            |:.:. |.|..|:|.:.|||     :.....|.:.:.|.: :|::|    |.:|           
Zfish   274 LAQKD-QDISFLRSMLGKLSEKLDQLEKNLELKFDVLDENQSKLSE----DLME----------- 322

  Fly   366 GYKLQASMFLNGNGPGENTHVSVYIKV-LPGEYD 398
             ::..||| ||    .|.:|::..:.: :.|.||
Zfish   323 -FRRDASM-LN----DELSHINARLNMGILGSYD 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf4NP_477416.1 PLN03086 <109..206 CDD:178635 17/104 (16%)
zf-TRAF 233..292 CDD:424248 19/58 (33%)
MATH_TRAF4 331..479 CDD:239750 16/70 (23%)
traf7NP_001073654.1 RING 100..132 CDD:214546 7/34 (21%)
Sina 141..>249 CDD:302762 31/150 (21%)
Snapin_Pallidin 260..342 CDD:291383 23/104 (22%)
WD40 <349..637 CDD:225201 2/2 (100%)
WD40 357..637 CDD:238121
WD40 repeat 368..406 CDD:293791
WD40 repeat 412..446 CDD:293791
WD40 repeat 451..486 CDD:293791
WD40 repeat 493..525 CDD:293791
WD40 repeat 531..565 CDD:293791
WD40 repeat 573..608 CDD:293791
WD40 repeat 615..637 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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