DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf4 and traf3

DIOPT Version :9

Sequence 1:NP_477416.1 Gene:Traf4 / 33638 FlyBaseID:FBgn0026319 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001003513.1 Gene:traf3 / 445119 ZFINID:ZDB-GENE-040801-257 Length:573 Species:Danio rerio


Alignment Length:544 Identity:137/544 - (25%)
Similarity:207/544 - (38%) Gaps:188/544 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 SSPTPGNNNNNMPITELEQIIYPGPDPKHIMGSLVFCIHHKQGCKWSDELRKLKGHLNACKHDAT 134
            |.|.|....:.:|:.| ::|.......:.||...|:|...|.|||....|:::..||..|.:...
Zfish    85 SKPNPVCPADLLPLFE-DKIFRDVCCNREIMALKVYCRSEKNGCKEQMCLQQVMEHLVICPYFEV 148

  Fly   135 QCP-NKCGAQIPRIMMTDHLQYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRI 198
            .|| .||..::.|..|.:||...|..|...||||..:.:...|::|     :|.|          
Zfish   149 PCPLGKCKEKMMRKDMPEHLSRKCKHREVTCEFCSLKMALTELQKH-----KETV---------- 198

  Fly   199 LRGRMTLHKSKDCAKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCDAGPIPRGELEAHLR 263
                                                  ||..|:|||..|....|.|.||.:|..
Zfish   199 --------------------------------------CPAFPVACPNHCSFSSILRSELSSHQH 225

  Fly   264 DECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAAHLSLMV----------------------- 305
            | |....|:|||...||.:||..|.:..|..|.|:.||.:|.                       
Zfish   226 D-CPKAQVTCSFIRYGCSYKGLNQEMREHESSFASEHLRMMAVRNTTLEAKVEDVKSELMERYKV 289

  Fly   306 --ALSSRQGQ------------------------------------------------------- 313
              :||||..:                                                       
Zfish   290 LPSLSSRLAEVERQYEEMREKNRQLEQKLVSMQMLMSSHSEKLLEVEMELRELRPLRAMREEVET 354

  Fly   314 ---QIQMLKSAVSKL----------------------------------------------SINY 329
               .::.::|.||.|                                              :.::
Zfish   355 LRGSVESMRSMVSSLDSSCVNSASGSHTLASLEQQLTRHDDLMSVHDVRLAEMDLKLQVLETASF 419

  Fly   330 TGTLLWKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLP 394
            .|||:|||.|:..:..||.....|.|.|.||||..:|||:.|.::|||:|.|:.||:|::..|:.
Zfish   420 NGTLIWKIRDYKRRKQEAVVSKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMR 484

  Fly   395 GEYDALLKWPFSHSITFTLFEQGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLGFGFPRFISHE 459
            |||||||:|||...:|..|.:||  ..:..:.::|.|||:..:|:||:.|.: :..|.|.|::..
Zfish   485 GEYDALLQWPFKQKVTLMLMDQG--PARKHLGDAFKPDPSSSSFRRPTGEMN-IASGCPLFVAQT 546

  Fly   460 LLHSRPFIKGDTVFLRVKVDPSKI 483
            :|.:..:||.||:|::|.||.|.:
Zfish   547 VLENGTYIKDDTIFIKVTVDTSDL 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf4NP_477416.1 PLN03086 <109..206 CDD:178635 26/97 (27%)
zf-TRAF 233..292 CDD:424248 23/58 (40%)
MATH_TRAF4 331..479 CDD:239750 61/147 (41%)
traf3NP_001003513.1 RING 55..92 CDD:214546 3/6 (50%)
zf-TRAF 139..194 CDD:280357 18/54 (33%)
zf-TRAF 198..253 CDD:280357 24/103 (23%)
Prefoldin <249..322 CDD:298833 10/72 (14%)
MATH_TRAF3 383..568 CDD:239746 63/187 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3301
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.950

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