DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf4 and traf4b

DIOPT Version :9

Sequence 1:NP_477416.1 Gene:Traf4 / 33638 FlyBaseID:FBgn0026319 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_997982.1 Gene:traf4b / 404035 ZFINID:ZDB-GENE-040305-2 Length:478 Species:Danio rerio


Alignment Length:413 Identity:174/413 - (42%)
Similarity:254/413 - (61%) Gaps:24/413 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 PITELEQIIYPGPDPKHIMGSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNKCGAQIPR 146
            |..||||.|...|         :.|||.::||:|:.:.:.|:.||:.|:.:...|||:|..::.|
Zfish    68 PDLELEQQILSLP---------IRCIHSEEGCRWTAQNKLLQAHLSVCEFNVVSCPNRCSVKLLR 123

  Fly   147 IMMTDHLQYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRILRGRMTLHKSKDC 211
            ..:.:|||:.|..|:..|:.|..:|:|...|.|.|.|.:|.||||.|||.|::|..:..|...:|
Zfish   124 RELPEHLQHDCAKRKLHCDHCGEQFTGEAYENHQGVCPEESVYCENKCGARMVRRLLAQHSVSEC 188

  Fly   212 AKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCDAGPIPRGELEAHLRDECQSLAVSCSFK 276
            .||...|.:|::||..||:..|..||||.|:.||.||....|.|..|.||:::.|.:..|.|.||
Zfish   189 LKRKLPCRYCKKEFLYDTIQNHQQQCPRFPMQCPNRCGTPGITRDTLMAHVKEGCSTAMVLCPFK 253

  Fly   277 EAGCRFKGPRQMLEAHLESNAAAHLSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLLWKITDWS 341
            ||||:.:.|:..:..|||..|..||||:..|.:||..:::.|:..:.:||.:..||||||:||:|
Zfish   254 EAGCKHRSPKTGVARHLEEAAPTHLSLLCGLVNRQRLELRDLRRRMEELSGSRDGTLLWKLTDFS 318

  Fly   342 AKMAEARGKDG--LELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWP 404
            .::.||:.:..  |||.||.||:..|||:||.|.||||||.||:||:|||::|||||||.||:||
Zfish   319 QRLQEAKTRTSGCLELFSPAFYSHNYGYRLQVSAFLNGNGSGEDTHMSVYLRVLPGEYDGLLEWP 383

  Fly   405 FSHSITFTLFEQ--GAQSGQGGVAESFVPDPTWENFQRPSN-----------EPDQLGFGFPRFI 456
            |.:.::|:|.:|  .|.:....:.|:|.|||||:|||||..           :...||||:|:||
Zfish   384 FPYRVSFSLLDQCDPALTKPQHITETFSPDPTWKNFQRPRPGALGSIRGGCLDESMLGFGYPKFI 448

  Fly   457 SHELLHSRPFIKGDTVFLRVKVD 479
            |||.:..|.:|:.:.||::..:|
Zfish   449 SHEEMKKRNYIRDNAVFIKASID 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf4NP_477416.1 PLN03086 <109..206 CDD:178635 35/96 (36%)
zf-TRAF 233..292 CDD:424248 25/58 (43%)
MATH_TRAF4 331..479 CDD:239750 79/162 (49%)
traf4bNP_997982.1 RING 18..55 CDD:238093
zf-TRAF 102..156 CDD:280357 18/53 (34%)
zf-TRAF 156..210 CDD:280357 23/53 (43%)
zf-TRAF 210..269 CDD:280357 25/58 (43%)
MATH_TRAF4 308..471 CDD:239750 79/162 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596485
Domainoid 1 1.000 187 1.000 Domainoid score I3271
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 394 1.000 Inparanoid score I1925
OMA 1 1.010 - - QHG48494
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 1 1.000 - - FOG0004698
OrthoInspector 1 1.000 - - otm26611
orthoMCL 1 0.900 - - OOG6_100533
Panther 1 1.100 - - O PTHR10131
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3301
SonicParanoid 1 1.000 - - X4401
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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