DRSC/TRiP Functional Genomics Resources

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Protein Alignment Traf4 and Traf6

DIOPT Version :9

Sequence 1:NP_477416.1 Gene:Traf4 / 33638 FlyBaseID:FBgn0026319 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_511080.2 Gene:Traf6 / 31746 FlyBaseID:FBgn0265464 Length:475 Species:Drosophila melanogaster


Alignment Length:414 Identity:90/414 - (21%)
Similarity:140/414 - (33%) Gaps:130/414 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 SEFSGAGLEEHNGS---CG------QEPVYCEAKCGQRILRGRMT--LHKSKDCAKRLRRCAHCQ 222
            |:.||...||...|   |.      .|||.  ..||.|..|..:|  :.|:..|      |....
  Fly    87 SDTSGEQEEELLDSRYECAICIDWLNEPVL--TSCGHRFCRSCLTAWMQKNNQC------CPMDN 143

  Fly   223 REFSA--DTLPLHAAQ---------CPRAPLACPQRCDAGPIPRGELEAHL-----RDECQSLAV 271
            :..||  |..|.:..:         ||.:.|.|  ...|.||   ||..||     |.:.:....
  Fly   144 KRLSAEHDIFPDNYTRREIEQLKRDCPNSSLGC--SVVASPI---ELHRHLPSCPYRRQQEPQEE 203

  Fly   272 SCSFKEAGCRFKG--PRQMLEAHLESNAAAHLSLM------------------------------ 304
            .|.|.:..|.|.|  ....||.||:::...|:.||                              
  Fly   204 KCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQAFQQTAIATWQPHKPSTSGAAVENGHGQ 268

  Fly   305 -------------------------VALSSRQGQQIQMLKSAVSKLSI---------NYT-GTLL 334
                                     |.|..|..:|...|::...:|.:         .|: ||::
  Fly   269 QQLPPPPQYANGVDEQIVQTMYQRIVVLEQRTREQETRLENMQKQLRLARQQAPVDPRYSNGTIV 333

  Fly   335 WKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHV-SVYIKVLPGEYD 398
            |:|....|.:|..|.....::.|...|||.:|||..|.:.:....|    || |:::.::..|.|
  Fly   334 WRIEQLGALVARLRANANNQVYSHECYTSPHGYKFCARLNIQPRKP----HVLSLHVHLMQSEND 394

  Fly   399 ALLKWPFS--------HSITFTLFEQGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLGFGFPRF 455
            ..|.|||.        |....||.:.          ::.:..|....|.:|.......||||..:
  Fly   395 YHLDWPFKGRIKLCMVHPADATLSQH----------DTIMTKPEILAFHKPREAISTRGFGFLEY 449

  Fly   456 ISHELLHSRPFIKGDTVFLRVKVD 479
            .:...:....|...|.:.::::::
  Fly   450 ANISNIIQLGFCADDRLLIKIEIN 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf4NP_477416.1 PLN03086 <109..206 CDD:178635 15/47 (32%)
zf-TRAF 233..292 CDD:424248 19/74 (26%)
MATH_TRAF4 331..479 CDD:239750 37/156 (24%)
Traf6NP_511080.2 RING 103..141 CDD:238093 12/45 (27%)
Sina 163..>230 CDD:302762 21/71 (30%)
MATH_TRAF6 330..473 CDD:239745 37/156 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438617
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10131
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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