DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf4 and traf1

DIOPT Version :9

Sequence 1:NP_477416.1 Gene:Traf4 / 33638 FlyBaseID:FBgn0026319 Length:486 Species:Drosophila melanogaster
Sequence 2:XP_031747100.1 Gene:traf1 / 101734662 XenbaseID:XB-GENE-22069371 Length:549 Species:Xenopus tropicalis


Alignment Length:582 Identity:135/582 - (23%)
Similarity:210/582 - (36%) Gaps:225/582 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 NNNNMPITELEQIIYP------GPDPKHIMGSLVFCIHHKQGCKWSDELRK----LKGH--LNAC 129
            |.:::|:.......||      .|..|::      |      |...:.|:|    |.||  ...|
 Frog    11 NLSSVPVENEFVFGYPTTICDVAPGEKYL------C------CSCKNVLKKAQQTLCGHRYCTPC 63

  Fly   130 -------KHDATQCPNKCGAQIPRIMMTDHLQYTCTMRRTRCEFCQSEFSGAGL----------- 176
                   .||.  || ||.|:.|..:..|.|     ::..|.      ||.|.:           
 Frog    64 LVWIVSRNHDL--CP-KCKAEDPTTLSDDSL-----LKEERA------FSDAAINKEISELKVHC 114

  Fly   177 --------------EEHNGSCGQEPVYCEAKCGQRILRGRMTLHKSKDCAKRLRRCAHCQREFSA 227
                          |||...|....:.|...||.|::|.::..|...:|.....:|..|.:.||:
 Frog   115 VIPGCTWRGLMRDYEEHESLCNYALIPCHTGCGHRVMRKQLADHLESECPNNTIKCPKCTQHFSS 179

  Fly   228 DTLPLHAAQCPRAPLACPQRCDAGPIPRGELEAHLRDE---------CQSLAVSCSFKEAGCRFK 283
            :..|.|             ||:.||.   :.::|.:.:         ..|....|.|...||.:.
 Frog   180 NEFPKH-------------RCEKGPT---DDQSHRKTDQSAKGKNGNSHSKKEKCHFTPLGCTYV 228

  Fly   284 GPRQMLEAHLESNAAAHLSLMVALSSR-------------------------QGQ---------- 313
            |.|:.::.|..::|||||||:..|..|                         .||          
 Frog   229 GSREKIKEHYRTSAAAHLSLVCPLILRIKDNLTNTEGKKNGFYVPLADSTDGPGQKNPFSLQAED 293

  Fly   314 --------------------------------QIQMLKSAVSKLS-------------------- 326
                                            ::|:.::.:|.||                    
 Frog   294 FKAGNGDLELDCGHAVGQPSDEVANRLSLLETRLQVFENIISVLSKEIDSSQSQLAAIKEQKAEE 358

  Fly   327 -------------------------------------INYTGTLLWKITDWSAKMAEARGKDGLE 354
                                                 .:|.|..||||:|.:.|..:|.....:.
 Frog   359 ERKVKALEHKVENLRCTLAMKDIVLNELEMRSACLEQTSYDGVFLWKISDLTNKSHDAVTGRAIS 423

  Fly   355 LVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLFEQGAQ 419
            |.||.|||::||||:...::|||:|.|:.||||::..|:.|||||||.|||.|.:||.|.:   .
 Frog   424 LYSPAFYTAKYGYKVCLRIYLNGDGAGKGTHVSLFFTVMKGEYDALLPWPFKHKVTFVLVD---H 485

  Fly   420 SGQGGVAESFVPDPTWENFQRPSNEPDQLGFGFPRFISHELLHS--RPFIKGDTVFLRVKVD 479
            :.:..|.::|.||.|..:||||.|:.: :..|.|.|.....|:|  ..:|:.:|:::|..:|
 Frog   486 NNRDSVFDAFRPDVTSASFQRPINDMN-VASGCPLFCPIAKLNSPKHAYIRENTLYIRCIID 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf4NP_477416.1 PLN03086 <109..206 CDD:178635 30/134 (22%)
zf-TRAF 233..292 CDD:424248 13/67 (19%)
MATH_TRAF4 331..479 CDD:239750 60/149 (40%)
traf1XP_031747100.1 RING_Ubox 38..79 CDD:418438 13/55 (24%)
RAD18 39..>214 CDD:227719 44/216 (20%)
TRAF_BIRC3_bd 317..377 CDD:406958 4/59 (7%)
MATH 400..546 CDD:351761 60/149 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391991at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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