Protein Alignment Traf4 and pdzrn3b

DIOPT Version :10

• Sequence 1: NP_477416.1
• Gene: Traf4 / 33638
• FlyBaseID: FBgn0026319
• Length: 486
• Species: Drosophila melanogaster
• Sequence 2: XP_073808503.1
• Gene: pdzrn3b / 100005518
• ZFINID: ZDB-GENE-071022-4
• Length: 1065
• Species: Danio rerio
• Alignment Length: 545
• Identity: 106/545 - (19%)
• Similarity: 178/545 - (32%)
• Gaps: 153/545 - (28%)

  Fly    14 FPSRLSPNRNSKDCS-TLASPVPPPTPPRNKTTSGSGNCA------TSRSSSSTVSSSHSSSHSS 71
            |...:.|:.....|: .|..|:..|        .|...||      ..:.||..|.....|:...
Zfish     8 FKGAVDPDFKCNLCNKVLEDPLTTP--------CGHVFCAGCVLPWVVQQSSCPVKCQRISTKEL 64

  Fly    72 PTPGNNNNNMPITELEQIIYPGPDPKHIMGSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQC 136
                  |:.:|:..|            |:...:.|.:|.:||:...:|:.|..|...|.:...:|
Zfish    65 ------NHVLPLKNL------------ILKLDIKCDNHARGCEKIVKLQHLAEHAEMCDYSPAKC 111

  Fly   137 PNK-CGAQIPRIMMTDHLQYTCTMRRTR-CEFCQSEFSGAG------------------LEEHNG 181
            .|| |...:....|..|::.:|..|... ||      ||.|                  |:.|||
Zfish   112 RNKGCSEVLNLKDMDAHMRESCDYRAVGICE------SGCGLMLTHKEQKLDNHCCLKALKAHNG 170

  Fly   182 SCGQEPVYCEAKCGQRILRGR-MTLHK--SKDCAKRLRRCAHCQREFSA--DTLPLHAAQCPRAP 241
            :                |:|: :||.|  .|...|..:|......:.||  :.|.:.|.:..:..
Zfish   171 A----------------LQGKVVTLDKELKKQALKSTKREKSLLAQLSAVHNELQMTALKYQKKF 219

  Fly   242 LACPQRCDA-----GPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAAHL 301
            .....|.|:     .|.|..:|   :..:.:.::::      |...|....:|  |.||.:   |
Zfish   220 TEYSARIDSLSKSLSPSPPCKL---ITGKTKEMSIN------GGETKSVTAIL--HRESGS---L 270

  Fly   302 SLMV-----ALSSRQGQQIQ--MLKSAVSKLSINYTGTLLWKITDWSAKMAEARGKD-------- 351
            ...:     .:.::.|...:  .:...|.|.:.:..|.|  :|.|   ::.|..|||
Zfish   271 GFNIVGGRPCVDNKDGTSNEGIFVSKIVEKGAADKEGGL--QIHD---RIMEVNGKDLSKATHDQ 330

  Fly   352 ---GLELVSPPFYTSQYGYKLQASMFLNGNGP---GENTHVSVYIKVLPGEYDALLKWPFSHSIT 410
               ...:...|....    .|:.:......||   |:...:|....:......||.|.|.|.:..
Zfish   331 AVEAFRMAKEPIMVQ----VLRRAPRPKPTGPTGEGQVVDISTQTDITFQHIMALSKLPTSSTPV 391

  Fly   411 FTLFEQGAQSGQGGVAESFVPDPTWENFQRP---------------SNEPDQLGFGFPRFISHEL 460
            ..|.:.....|.....|.|.|:...|..|..               :|..|:|||         .
Zfish   392 DVLEQYLLPEGHSPAHEYFDPNDFLEGMQHEIEREELEYEEVDLYRTNIHDKLGF---------T 447

  Fly   461 LHSRPFIKGDTVFLRVKVDPSKIVA 485
            :..|...:.:|.....::||:.|.|
Zfish   448 VCYRTDDEDETGIYVSEIDPNSIAA 472

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Traf4	NP_477416.1	PLN03086	<109..206	CDD:178635	27/117 (23%)
		zf-TRAF	233..292	CDD:280357	9/63 (14%)
		MATH_TRAF4	331..479	CDD:239750	33/176 (19%)
pdzrn3b	XP_073808503.1	None