DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Traf4 and rnf151

DIOPT Version :10

Sequence 1:NP_477416.1 Gene:Traf4 / 33638 FlyBaseID:FBgn0026319 Length:486 Species:Drosophila melanogaster
Sequence 2:XP_021328191.1 Gene:rnf151 / 100004674 ZFINID:ZDB-GENE-121214-234 Length:243 Species:Danio rerio


Alignment Length:207 Identity:41/207 - (19%)
Similarity:71/207 - (34%) Gaps:63/207 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 VFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNK-CGAQIPRIMMTDHLQYTCTMRRTRCEFC 167
            |.|.:.:|||:.:..|.....|::.|.::...||:: ||.|:.|                     
Zfish    81 VKCRNGQQGCRATFPLSNEYLHISTCPYEWQICPHEGCGQQVLR--------------------- 124

  Fly   168 QSEFSGAGLEEHNGSCGQEPVYCEAKCGQRILRGRMTLHKSKDCAKRLRRCAHCQREFSADTLPL 232
                  ..::.|:.||......|...||..::|...|.|   :|.:.|::....:|.        
Zfish   125 ------KDVQAHDQSCTHWRQLCPMGCGTLLVRENQTQH---NCYRELQQRYLAERR-------- 172

  Fly   233 HAAQCPRAPLACPQRCDAGPIPR---------GELEAHLRDECQSLAVSCSFKEAGCRFKGPRQM 288
                        .||..|..:.|         .:::..:...|:||.|.....|||   :|....
Zfish   173 ------------KQRAIAANLRRKMQRMQSRMAQIKRQINLMCESLEVGDLETEAG---EGTSAW 222

  Fly   289 LEAHLESNAAAH 300
            .:|...|:...|
Zfish   223 TDASPSSSRHRH 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Traf4NP_477416.1 PLN03086 <109..206 CDD:178635 20/97 (21%)
zf-TRAF 233..292 CDD:280357 12/67 (18%)
MATH_TRAF4 331..479 CDD:239750
rnf151XP_021328191.1 RING_Ubox 15..63 CDD:473075
zf-TRAF 102..157 CDD:280357 16/81 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.