DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Atet and ABCG4

DIOPT Version :9

Sequence 1:NP_001097079.1 Gene:Atet / 33636 FlyBaseID:FBgn0020762 Length:832 Species:Drosophila melanogaster
Sequence 2:NP_194305.1 Gene:ABCG4 / 828680 AraportID:AT4G25750 Length:577 Species:Arabidopsis thaliana


Alignment Length:679 Identity:172/679 - (25%)
Similarity:298/679 - (43%) Gaps:159/679 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 ILKSVSGKFRNGEITAIMGPSGAGKSTLMNILAGYKTAQLSGSVLINSKERNLRRFRKLSCYIMQ 229
            ||::::......:|.||:||||||||||::|||. :|:..|||:|:||...|...:||:|.|:.|
plant    30 ILRNITLTSHPSQILAIIGPSGAGKSTLLDILAA-RTSPTSGSILLNSVLINPSSYRKISSYVPQ 93

  Fly   230 DDVLIANLTVREAMMVAANLKLGKNMISYAKVVVVEEILETIGLKESVNT-LTCNLSGGQRKRLS 293
            .|.....|||.|....:|:|.|.||:...:.||.  .:|:.:.|....:| |...||||:|:|:|
plant    94 HDTFFPLLTVSETFTFSASLLLPKNLSKVSSVVA--SLLKELNLTHLAHTRLGQGLSGGERRRVS 156

  Fly   294 IALELVNNPPVMFFDEPTSGLDSSTCFQLISLLRSLARG-GRTIVCTIHQPSARLFEKFDHLYLL 357
            |.|.|:::|.|:..|||||||||.:.|.::.:|:|:|.. .|.::.:|||||.::....|.:.||
plant   157 IGLSLLHDPEVLLLDEPTSGLDSKSAFDVVQILKSIATSRERIVILSIHQPSFKILSLIDRVLLL 221

  Fly   358 AQGQCVYEGRVKGLVPYLSSLGYECPSYHNPADYVLEVASGEYGDAVPKLVDAVKSGACKKYAHK 422
            ::|..||.||:..|..:|.|.|:..||..|..:|.:|:                           
plant   222 SKGTIVYHGRLDLLEAFLLSKGFTVPSQLNSLEYAMEI--------------------------- 259

  Fly   423 DYVLTLAQKGCNNDIIKGSGSGAENAMAILTLEDEKPPLEDRQLEPSIPVDDPAELKPPKLETQQ 487
                                           |::.:.|.|:..:  ::|...|...|        
plant   260 -------------------------------LQNIRDPYENANI--ALPDHCPESKK-------- 283

  Fly   488 SQNSDCSVVNMPTNAVDDSCSFSSSKGTQNAVGGSGSGGPSAVVGCMTSLLDSHESVVTLPNKTG 552
             ||...|:|.           :.||:.|:                  .|||.|            
plant   284 -QNQKQSIVR-----------YKSSRITE------------------ISLLSS------------ 306

  Fly   553 FPTSGWTQFWILLKRSFRTILRDKMLTHMRLFSHVIVGAIIGMIYYDVGNEASKIMSNAGCIFFV 617
                   :||.::.|:     |..:||:  :...::||.::|.||.::|.....|....| :|..
plant   307 -------RFWKIIYRT-----RQLLLTN--ILESLVVGLVLGTIYLNIGTGKEGIRKRFG-LFAF 356

  Fly   618 SLFTTFTAMMPTILTFPTEMSVFVREHLNYWYSLKAFYFAKTIADMPFQIVFSSVYVLVVYYLTS 682
            :|....::...|:..|..|..:.:||..:..|.|.:...|.|:..:|:.::.:.:|.:.:|:|..
plant   357 TLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVG 421

  Fly   683 QPMELERVSMFVLICVLNSLVAQSLGLLIGA-GMNIETGVFLGPVTTIPTILFSGFFVNFDTIPG 746
            .....:.::.|||:..:..|:|.|..|.:.: ..|...|.....:......||||:|::.:::|.
plant   422 LCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSSVTILLAAFFLFSGYFISKESLPK 486

  Fly   747 YLQWVTYVSYVRYGFEGAMVAIYGMDRAKMQCNQMYCHYRVPKKFLEEMSMDNALF--------- 802
            |..::.:.|..:|..:..::            |:..|.:.....:.||.|:::.|.         
plant   487 YWLFMYFFSMYKYALDALLI------------NEYSCLHNKCLVWFEEASVNSCLVTGGDVLDKN 539

  Fly   803 -------WVDAVALIGIFFALRIIAYFVL 824
                   |.:...|:|.|...|::.:.||
plant   540 GLHERQRWFNVYMLLGFFVLYRVLCFLVL 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AtetNP_001097079.1 3a01204 137..825 CDD:273361 172/679 (25%)
ABCG_EPDR 142..366 CDD:213180 84/202 (42%)
ABC2_membrane 564..767 CDD:279410 45/203 (22%)
ABCG4NP_194305.1 3a01204 30..572 CDD:273361 172/679 (25%)
P-loop_NTPase 30..230 CDD:304359 84/202 (42%)
ABC2_membrane 304..507 CDD:279410 49/241 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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